RNA–Protein interactions for RNA: ENST00000543660.1

NPIPB4-219, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 5

Gene NPIPB4, Length 353 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-219	ENST00000543660	RNF2	Q99496	336 aa		3.57	□□□□□ -1.84
NPIPB4-219	ENST00000543660	YIPF3	Q9GZM5	350 aa		3.57	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CHST5	Q9GZS9	411 aa		3.57	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CST11	Q9H112	138 aa		3.57	□□□□□ -1.84
NPIPB4-219	ENST00000543660		Q9HAA7	133 aa		3.57	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SPANXB1	Q9NS25	103 aa	Predicted RBP	3.57	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CCDC59	Q9P031	241 aa	Known RBP	3.57	□□□□□ -1.84
NPIPB4-219	ENST00000543660	ERGIC3	Q9Y282	383 aa		3.57	□□□□□ -1.84
NPIPB4-219	ENST00000543660	FLG2	Q5D862	2391 aa	Predicted RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	LOC110117498-PIK3R3	F6TDL0	507 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	C15orf65	H3BRN8	121 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	FCN1	O00602	326 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	PPP1R2P9	O14990	202 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	MAGEB4	O15481	346 aa	Predicted RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SC5D	O75845	299 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	GATB	O75879	557 aa	Known RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	OR2A4	O95047	310 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	NDUFA3	O95167	84 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	TSPAN13	O95857	204 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CYB5A	P00167	134 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	TRBV12-3	P01733	135 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	TRGV3	P03979	118 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RPL35A	P18077	110 aa	Known RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	ATP6V1B2	P21281	511 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SLC2A5	P22732	501 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	IL3RA	P26951	378 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	KIR2DS2	P43631	304 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CBX5	P45973	191 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RIDA	P52758	137 aa	Known RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	TAS2R60	P59551	318 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	NANOS2	P60321	138 aa	Known RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	TMEM267	Q0VDI3	215 aa	Predicted RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	POU2AF1	Q16633	256 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	DEFB135	Q30KP9	77 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	DEFB114	Q30KQ6	69 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	ACTBL2	Q562R1	376 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CT45A1	Q5HYN5	189 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RBM48	Q5RL73	367 aa	Known RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	BCL2L15	Q5TBC7	163 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	OR2G6	Q5TZ20	316 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	GLYAT	Q6IB77	296 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	C8orf82	Q6P1X6	216 aa	Predicted RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	ARPIN	Q7Z6K5	226 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	TMEM179B	Q7Z7N9	219 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CROCCP2	Q86T23	111 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	MS4A15	Q8N5U1	240 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	IQCF1	Q8N6M8	205 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	ZNF439	Q8NDP4	499 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CT45A3	Q8NHU0	189 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	UFD1	Q92890	307 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RCN3	Q96D15	328 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CENPN	Q96H22	339 aa	Predicted RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	PYURF	Q96I23	114 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CIB1	Q99828	191 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	APOL4	Q9BPW4	351 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	TTTY10	Q9BZA0	68 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	BARHL1	Q9BZE3	327 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	OR51M1	Q9H341	326 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RBKS	Q9H477	322 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	MOB1A	Q9H8S9	216 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	IL1RAP	Q9NPH3	570 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SCRT2	Q9NQ03	307 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	OR52A1	Q9UKL2	312 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SAMD4A	Q9UPU9	718 aa	Known RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	KCNIP3	Q9Y2W7	256 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RPL36	Q9Y3U8	105 aa	Known RBP	3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660		R4GMQ9	66 aa		3.56	□□□□□ -1.84
NPIPB4-219	ENST00000543660	HMCN2	Q8NDA2	5059 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	IGHV3-43	A0A0B4J1X8	118 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660		A0A0G2JND7	137 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SNURFL	B1AK76	121 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660		H0YJX3	145 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SMLR1	H3BR10	107 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SULT1C2	O00338	296 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SDCBP	O00560	298 aa	Predicted RBP	3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SNAI2	O43623	268 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	MPDU1	O75352	247 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	TNFAIP8	O95379	198 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RAB3D	O95716	219 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	IFNA4	P05014	189 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	FABP3	P05413	133 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	MRPL3	P09001	348 aa	Known RBP	3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	IGHV3-43D	P0DP04	118 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	MGMT	P16455	207 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CTRB1	P17538	263 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	GZMH	P20718	246 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	GPR183	P32249	361 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RIG	Q13278	110 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RBMY1F	Q15415	496 aa	Known RBP	3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RBMS2	Q15434	407 aa	Known RBP	3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	GUCA2B	Q16661	112 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	RPEL1	Q2QD12	228 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SOHLH1	Q5JUK2	328 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	IDNK	Q5T6J7	187 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CTRB2	Q6GPI1	263 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	ZNF343	Q6P1L6	599 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	UNQ5815/PRO19632	Q6UWF5	114 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	SLC16A13	Q7RTY0	426 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	PPP1R27	Q86WC6	154 aa		3.55	□□□□□ -1.84
NPIPB4-219	ENST00000543660	CMTM1	Q8IZ96	169 aa		3.55	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms