RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 WT1-ASQ06250 92 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 ZNF846Q147U1 533 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 CTRB2Q6GPI1 263 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 Q6ZRM9 215 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 H2BFWTQ7Z2G1 175 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 SELENOHQ8IZQ5 122 aaKnown RBP12.16□□□□□ -0.46
RPAIN-206ENST00000539417 CADM3Q8N126 398 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 OR1N2Q8NGR9 330 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 QTRT1Q9BXR0 403 aaKnown RBP12.16□□□□□ -0.46
RPAIN-206ENST00000539417 COMMD5Q9GZQ3 224 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 NDUFA4L2Q9NRX3 87 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 TMEM14BQ9NUH8 114 aa12.16□□□□□ -0.46
RPAIN-206ENST00000539417 TRBV9A0A0B4J1U6 114 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 A0A0B4J293 547 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 C15orf61A6NNL5 157 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 NPIPB5A8MRT5 1133 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 SNAPC5O75971 98 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 OR2J3O76001 311 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 CDS2O95674 445 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 CRYGCP07315 174 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 SLURP1P55000 103 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 RHOGP84095 191 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 TMEM187Q14656 261 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 SAMD5Q5TGI4 173 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 TMED4Q7Z7H5 227 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 HINT2Q9BX68 163 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 FLVCR2Q9UPI3 526 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 S4R3C0 116 aa12.15□□□□□ -0.46
RPAIN-206ENST00000539417 ANKRD34BA5PLL1 514 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 NDUFB8O95169 186 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 FGF2P09038 288 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 TRAPPC2P0DI81 140 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 TRAPPC2BP0DI82 140 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 CD40LGP29965 261 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 INPP1P49441 399 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 SPINK9Q5DT21 86 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 OR1L8Q8NGR8 309 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 NOTCH3Q9UM47 2321 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 AKR1C2P52895 323 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 MFAP2P55001 183 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 TMEM268Q5VZI3 342 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 DEDD2Q8WXF8 326 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 GPR146Q96CH1 333 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 GALNT14Q96FL9 552 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 PRNDQ9UKY0 176 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 ZNF257Q9Y2Q1 563 aa12.14□□□□□ -0.47
RPAIN-206ENST00000539417 C13orf42A0A1B0GVH6 325 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 IGHV3-23P01764 117 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 OR13C7P0DN81 318 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 ZNF616Q08AN1 781 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 BEAN1Q3B7T3 259 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 SGPP2Q8IWX5 399 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 OR4A16Q8NH70 328 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 DLX4Q92988 240 aaPredicted RBP12.13□□□□□ -0.47
RPAIN-206ENST00000539417 TMEM56Q96MV1 263 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 SCGB3A2Q96PL1 93 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 FBXL7Q9UJT9 491 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 TMEM56-RWDD3S4R434 201 aa12.13□□□□□ -0.47
RPAIN-206ENST00000539417 IGLV11-55A0A075B6I3 123 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 ST8SIA3O43173 380 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 NDUFB6O95139 128 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 PRB2P02812 416 aaPredicted RBP12.12□□□□□ -0.47
RPAIN-206ENST00000539417 DHODHQ02127 395 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 KLK9Q2XQG4 91 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 ZNF343Q6P1L6 599 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 SLC25A42Q86VD7 318 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 SLC35G3Q8N808 338 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 DCUN1D4Q92564 292 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 RBPMSQ93062 196 aaKnown RBP12.12□□□□□ -0.47
RPAIN-206ENST00000539417 SLC25A21Q9BQT8 299 aaPredicted RBP12.12□□□□□ -0.47
RPAIN-206ENST00000539417 KLK9Q9UKQ9 250 aa12.12□□□□□ -0.47
RPAIN-206ENST00000539417 A0A0G2JLM5 398 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 NAP1L6A6NFF2 107 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 LINC01619G3V211 115 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 B3GALNT1O75752 331 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 HSPB1P04792 205 aaKnown RBP12.11□□□□□ -0.47
RPAIN-206ENST00000539417 IFITM3Q01628 133 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 PPP1R1AQ13522 171 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 EXOSC2Q13868 293 aaKnown RBP12.11□□□□□ -0.47
RPAIN-206ENST00000539417 RBMS2Q15434 407 aaKnown RBP12.11□□□□□ -0.47
RPAIN-206ENST00000539417 C15orf32Q32M92 178 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 ANKRD55Q3KP44 614 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 C11orf87Q6NUJ2 197 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 LYZL2Q7Z4W2 148 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 OR5B3Q8NH48 314 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 DPF1Q92782 380 aa12.11□□□□□ -0.47
RPAIN-206ENST00000539417 LSM10Q969L4 123 aaKnown RBP12.11□□□□□ -0.47
RPAIN-206ENST00000539417 MFSD2BA6NFX1 497 aa12.1□□□□□ -0.47
RPAIN-206ENST00000539417 FAM223BA6NKX1 122 aa12.1□□□□□ -0.47
RPAIN-206ENST00000539417 HOXD3P31249 432 aaPredicted RBP12.1□□□□□ -0.47
RPAIN-206ENST00000539417 HSPE1P61604 102 aaKnown RBP12.1□□□□□ -0.47
RPAIN-206ENST00000539417 PRCDQ00LT1 54 aa12.1□□□□□ -0.47
RPAIN-206ENST00000539417 ATP5G2Q06055 141 aa12.1□□□□□ -0.47
RPAIN-206ENST00000539417 FAM223AQ8IWN6 122 aa12.1□□□□□ -0.47
RPAIN-206ENST00000539417 NECAP1Q8NC96 275 aa12.1□□□□□ -0.47
RPAIN-206ENST00000539417 RRNAD1Q96FB5 475 aaKnown RBP12.1□□□□□ -0.47
RPAIN-206ENST00000539417 USMG5Q96IX5 58 aa12.1□□□□□ -0.47
RPAIN-206ENST00000539417 SRSF8Q9BRL6 282 aaKnown RBP12.1□□□□□ -0.47
RPAIN-206ENST00000539417 FKBP11Q9NYL4 201 aa12.1□□□□□ -0.47
RPAIN-206ENST00000539417 TBC1D24Q9ULP9 559 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms