RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 RBMXL2O75526 392 aaKnown RBP11.09□□□□□ -0.63
NUP54-216ENST00000514901 IGKV1-5P01602 117 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 P0C879 139 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 PSMB6P28072 239 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 CCR6P51684 374 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 TMEM187Q14656 261 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 C18orf65Q6ZTR6 163 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 C8orf86Q6ZUL3 223 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 ZNF429Q86V71 674 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 SELENOHQ8IZQ5 122 aaKnown RBP11.09□□□□□ -0.63
NUP54-216ENST00000514901 CENPSQ8N2Z9 138 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 RNASE11Q8TAA1 199 aaKnown RBP11.09□□□□□ -0.63
NUP54-216ENST00000514901 NDUFA4L2Q9NRX3 87 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 CACFD1Q9UGQ2 172 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 NSG2Q9Y328 171 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 A0A1B0GW64 132 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 CGB1A6NKQ9 187 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 FAM223BA6NKX1 122 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 I3L521 148 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 CYB5BO43169 146 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 MYOD1P15172 320 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 HIST1H1BP16401 226 aaKnown RBP11.08□□□□□ -0.64
NUP54-216ENST00000514901 CTRB1P17538 263 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 HSPE1P61604 102 aaKnown RBP11.08□□□□□ -0.64
NUP54-216ENST00000514901 SUPT4H1P63272 117 aaKnown RBP11.08□□□□□ -0.64
NUP54-216ENST00000514901 CTRB2Q6GPI1 263 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 FAM223AQ8IWN6 122 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 LGI3Q8N145 548 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 WFDC9Q8NEX5 89 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 CASTOR1Q8WTX7 329 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 LSM10Q969L4 123 aaKnown RBP11.08□□□□□ -0.64
NUP54-216ENST00000514901 GNB4Q9HAV0 340 aa11.08□□□□□ -0.64
NUP54-216ENST00000514901 NBEAL1Q6ZS30 2694 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 TRBV9A0A0B4J1U6 114 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 A0A0B4J293 547 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 IGLC7A0M8Q6 106 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 LGALS1P09382 135 aaKnown RBP11.07□□□□□ -0.64
NUP54-216ENST00000514901 DEFA4P12838 97 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 AREGP15514 252 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 BTCP35070 178 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 RAB25P57735 213 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 KLK9Q2XQG4 91 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 FAM209BQ5JX69 171 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 TMEM268Q5VZI3 342 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 MZT2BQ6NZ67 158 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 NECAP1Q8NC96 275 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 OR1N2Q8NGR9 330 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 RAX2Q96IS3 184 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 P2RX4Q99571 388 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 HINT2Q9BX68 163 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.07□□□□□ -0.64
NUP54-216ENST00000514901 KLK9Q9UKQ9 250 aa11.07□□□□□ -0.64
NUP54-216ENST00000514901 A0A0B4J2A0 478 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 DUXBA0A1W2PPF3 345 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 UPK1BO75841 260 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 SFT2D2O95562 160 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 OR13C7P0DN81 318 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 VAMP1P23763 118 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 RHOGP84095 191 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 PRCDQ00LT1 54 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 ATP5G2Q06055 141 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 ETV3LQ6ZN32 361 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 OR11H1Q8NG94 326 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 OR1L6Q8NGR2 347 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 LHFPL5Q8TAF8 219 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 DPF1Q92782 380 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 PDCD10Q9BUL8 212 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 THYN1Q9P016 225 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 SHPKQ9UHJ6 478 aa11.06□□□□□ -0.64
NUP54-216ENST00000514901 DBX1A6NMT0 343 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 HSPB1P04792 205 aaKnown RBP11.05□□□□□ -0.64
NUP54-216ENST00000514901 OR8U8P0C7N1 319 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 CD33P20138 364 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 MECP2P51608 486 aaKnown RBP11.05□□□□□ -0.64
NUP54-216ENST00000514901 ERHP84090 104 aaKnown RBP11.05□□□□□ -0.64
NUP54-216ENST00000514901 ZNF616Q08AN1 781 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 ASAH1Q13510 395 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 PPP1R1AQ13522 171 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 IZUMO4Q1ZYL8 232 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 LINC00482Q8N8I6 264 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 LRTM2Q8N967 370 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 OR10W1Q8NGF6 305 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 OR52E5Q8NH55 327 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 GPR146Q96CH1 333 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 OR5B12Q96R08 314 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 ALX4Q9H161 411 aaPredicted RBP11.05□□□□□ -0.64
NUP54-216ENST00000514901 PLEKHA3Q9HB20 300 aa11.05□□□□□ -0.64
NUP54-216ENST00000514901 RANGRFQ9HD47 186 aaPredicted RBP11.05□□□□□ -0.64
NUP54-216ENST00000514901 INS-IGF2F8WCM5 200 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 ST8SIA3O43173 380 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 DUS4LO95620 317 aaKnown RBP11.04□□□□□ -0.64
NUP54-216ENST00000514901 IFNA17P01571 189 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 IGHV3-11P01762 117 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 PRH1P02810 166 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 REG1AP05451 166 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 WT1-ASQ06250 92 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 FHL3Q13643 280 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 DEFB136Q30KP8 78 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 AARDQ4LEZ3 155 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 ZNF343Q6P1L6 599 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms