RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TRAPPC2BP0DI82 140 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 TBPP20226 339 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 MFAP2P55001 183 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 PIGPP57054 158 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 RND3P61587 244 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 RPEL1Q2QD12 228 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 SCGB2B2Q4G0G5 96 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 ADAMTSL5Q6ZMM2 481 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 MCFD2Q8NI22 146 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 MARCH1Q8TCQ1 289 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 TP53RKQ96S44 253 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 B9D2Q9BPU9 175 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 HINT2Q9BX68 163 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 NDUFA4L2Q9NRX3 87 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 OR51B2Q9Y5P1 312 aa13.81□□□□□ -0.2
COL9A3-214ENST00000490398 KMT2CQ8NEZ4 4911 aaKnown RBP13.8□□□□□ -0.2
COL9A3-214ENST00000490398 PTBP1P26599 531 aaKnown RBP eCLIP13.8□□□□□ -0.2
COL9A3-214ENST00000490398 CLEC19AQ6UXS0 136 aa13.8□□□□□ -0.2
COL9A3-214ENST00000490398 OR4C16Q8NGL9 310 aa13.8□□□□□ -0.2
COL9A3-214ENST00000490398 OR13C8Q8NGS7 320 aa13.8□□□□□ -0.2
COL9A3-214ENST00000490398 TERB2Q8NHR7 220 aa13.8□□□□□ -0.2
COL9A3-214ENST00000490398 ELOVL1Q9BW60 279 aa13.8□□□□□ -0.2
COL9A3-214ENST00000490398 OR2C1O95371 312 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 IGKV1-5P01602 117 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 FGF2P09038 288 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 OR13C7P0DN81 318 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 DEFA4P12838 97 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 GP9P14770 177 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 MRPS10P82664 201 aaKnown RBP13.79□□□□□ -0.2
COL9A3-214ENST00000490398 SP6Q3SY56 376 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 CADM3Q8N126 398 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 OR6Q1Q8NGQ2 317 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 OR1L8Q8NGR8 309 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 ZC4H2Q9NQZ6 224 aa13.79□□□□□ -0.2
COL9A3-214ENST00000490398 FAM212BQ9NTI7 297 aaPredicted RBP13.79□□□□□ -0.2
COL9A3-214ENST00000490398 IGHV3-21A0A0B4J1V1 117 aa13.78□□□□□ -0.2
COL9A3-214ENST00000490398 IZUMO1RA6ND01 250 aa13.78□□□□□ -0.2
COL9A3-214ENST00000490398 CCDC160A6NGH7 325 aa13.78□□□□□ -0.2
COL9A3-214ENST00000490398 C15orf61A6NNL5 157 aa13.78□□□□□ -0.2
COL9A3-214ENST00000490398 SNAPC5O75971 98 aa13.78□□□□□ -0.2
COL9A3-214ENST00000490398 S100GP29377 79 aa13.78□□□□□ -0.2
COL9A3-214ENST00000490398 SSBP1Q04837 148 aaKnown RBP13.78□□□□□ -0.2
COL9A3-214ENST00000490398 CD69Q07108 199 aa13.78□□□□□ -0.2
COL9A3-214ENST00000490398 ZNF486Q96H40 463 aaPredicted RBP13.78□□□□□ -0.2
COL9A3-214ENST00000490398 ASCL2Q99929 193 aa13.78□□□□□ -0.2
COL9A3-214ENST00000490398 SRSF8Q9BRL6 282 aaKnown RBP13.78□□□□□ -0.2
COL9A3-214ENST00000490398 RTBDNQ9BSG5 229 aaPredicted RBP13.78□□□□□ -0.2
COL9A3-214ENST00000490398 TMEM14BQ9NUH8 114 aa13.78□□□□□ -0.2
COL9A3-214ENST00000490398 ANKRD20A5PA0PJZ0 165 aa13.77□□□□□ -0.21
COL9A3-214ENST00000490398 FABP12A6NFH5 140 aa13.77□□□□□ -0.21
COL9A3-214ENST00000490398 H0Y980 276 aa13.77□□□□□ -0.21
COL9A3-214ENST00000490398 GSTZ1O43708 216 aaPredicted RBP13.77□□□□□ -0.21
COL9A3-214ENST00000490398 SERPINE2P07093 398 aa13.77□□□□□ -0.21
COL9A3-214ENST00000490398 GDPD1Q8N9F7 314 aa13.77□□□□□ -0.21
COL9A3-214ENST00000490398 SELENOKQ9Y6D0 94 aa13.77□□□□□ -0.21
COL9A3-214ENST00000490398 A0A0G2JRQ6 117 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 C3orf85A0A1B0GTC6 90 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 DHFRP00374 187 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 CTSDP07339 412 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-214ENST00000490398 P0C879 139 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 AKAIN1P0CW23 69 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 HIST1H1BP16401 226 aaKnown RBP13.76□□□□□ -0.21
COL9A3-214ENST00000490398 ARL3P36405 182 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 MEF2DQ14814 521 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 H2BFWTQ7Z2G1 175 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 Q8N1Y9 231 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 LSM10Q969L4 123 aaKnown RBP13.76□□□□□ -0.21
COL9A3-214ENST00000490398 EEF1AKMT3Q96AZ1 226 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 C5orf66Q9H5L9 145 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 PRNDQ9UKY0 176 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 V9GYH0 126 aa13.76□□□□□ -0.21
COL9A3-214ENST00000490398 SORL1Q92673 2214 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 A0A0B4J293 547 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 GGCTO75223 188 aaKnown RBP13.75□□□□□ -0.21
COL9A3-214ENST00000490398 CLEC3BP05452 202 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 GPR183P32249 361 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 MECP2P51608 486 aaKnown RBP13.75□□□□□ -0.21
COL9A3-214ENST00000490398 TATDN3Q17R31 274 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 SPINK9Q5DT21 86 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 SLC25A24Q6NUK1 477 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 OR51S1Q8NGJ8 323 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 ZNF502Q8TBZ5 544 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 ZFAND1Q8TCF1 268 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 COPZ2Q9P299 210 aa13.75□□□□□ -0.21
COL9A3-214ENST00000490398 RSL24D1Q9UHA3 163 aaKnown RBP13.75□□□□□ -0.21
COL9A3-214ENST00000490398 F11RQ9Y624 299 aaKnown RBP13.75□□□□□ -0.21
COL9A3-214ENST00000490398 IGHV3-35A0A0C4DH35 117 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 DISC1C4P0D8 188 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 THOC7Q6I9Y2 204 aaKnown RBP13.74□□□□□ -0.21
COL9A3-214ENST00000490398 OR5B3Q8NH48 314 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 OR4A16Q8NH70 328 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 LHFPL5Q8TAF8 219 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 CACNG8Q8WXS5 425 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 TSC22D3Q99576 134 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 SIGLEC8Q9NYZ4 499 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 GPR132Q9UNW8 380 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 SMAD5-AS1Q9Y6J3 95 aa13.74□□□□□ -0.21
COL9A3-214ENST00000490398 DYNC2H1Q8NCM8 4307 aaKnown RBP13.74□□□□□ -0.21
COL9A3-214ENST00000490398 C2orf70A6NJV1 201 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 F8W735 103 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms