RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 GYPCP04921 128 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 S100A8P05109 93 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 CST2P09228 141 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 P0DMU3 169 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 FAM231AP0DMU4 169 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 FAM231CP0DMU5 169 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ESDP10768 282 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SCGB1A1P11684 91 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SPNP16150 400 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 HIST1H1BP16401 226 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 AKR1C4P17516 323 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 DDTP30046 118 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 S100A11P31949 105 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 AKR1C3P42330 323 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 RPL5P46777 297 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 SRP9P49458 86 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 IDH3GP51553 393 aaPredicted RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 AKR1D1P51857 326 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 CLDN12P56749 244 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 CDC42P60953 191 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 COPZ1P61923 177 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 RRAS2P62070 204 aaPredicted RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 DCDP81605 110 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 FAM3AP98173 230 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 TFAMQ00059 246 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 EMX2Q04743 252 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 AESQ08117 197 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 C2orf80Q0P641 193 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 MLLT11Q13015 90 aaPredicted RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 KRR1Q13601 381 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR4D1Q15615 310 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 PLPPR5Q32ZL2 321 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SMIM21Q3B7S5 101 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ACTL10Q5JWF8 245 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 FAM74A1Q5RGS3 127 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 NCMAPQ5T1S8 102 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 LPCAT4Q643R3 524 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 FAHD1Q6P587 224 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 DNM1P34Q6PK57 102 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ZNF322Q6U7Q0 402 aaPredicted RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 DRAM2Q6UX65 266 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SLC35E3Q7Z769 313 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 LRRC28Q86X40 367 aaPredicted RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 ANGPTL5Q86XS5 388 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SLC35F6Q8N357 371 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ZNF676Q8N7Q3 588 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 TMEM161BQ8NDZ6 487 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 PXT1Q8NFP0 134 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR11H1Q8NG94 326 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR11G2Q8NGC1 345 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR5C1Q8NGR4 320 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR10X1Q8NGY0 326 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR6K2Q8NGY2 324 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR11H2Q8NH07 326 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR4A5Q8NH83 315 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 RNASE11Q8TAA1 199 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 GRPEL2Q8TAA5 225 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 DYNC2LI1Q8TCX1 351 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 GPR119Q8TDV5 335 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 DOK4Q8TEW6 326 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OR5P2Q8WZ92 322 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 CLDN23Q96B33 292 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 PPWD1Q96BP3 646 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 CPNE2Q96FN4 548 aaPredicted RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 CMSS1Q9BQ75 279 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 CHST5Q9GZS9 411 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 RNF122Q9H9V4 155 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 TPT1P8Q9HAU6 139 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 LRTM1Q9HBL6 345 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 TMBIM4Q9HC24 238 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 DMAC2Q9NW81 257 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 C1orf109Q9NX04 203 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 OPTCQ9UBM4 332 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 METTL1Q9UBP6 276 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 SLC23A2Q9UGH3 650 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 SS18L2Q9UHA2 77 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 STOML2Q9UJZ1 356 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 JPT1Q9UK76 154 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 FBXO5Q9UKT4 447 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 BTRCQ9Y297 605 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ARL2BPQ9Y2Y0 163 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 V9GYQ6 96 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 ZFHX3Q15911 3703 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 KMT2BQ9UMN6 2715 aaPredicted RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 NUMA1Q14980 2115 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 TNRC6AQ8NDV7 1962 aaKnown RBP0.76□□□□□ -2.29
SMC4-220ENST00000488017 TANC2Q9HCD6 1990 aa0.76□□□□□ -2.29
SMC4-220ENST00000488017 PLXNA2O75051 1894 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 MAST2Q6P0Q8 1798 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 DLEC1Q9Y238 1755 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 QSER1Q2KHR3 1735 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 NRXN2Q9P2S2 1712 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 C3P01024 1663 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 GCC2Q8IWJ2 1684 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 LRP5O75197 1615 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 PHRF1Q9P1Y6 1649 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 MAP3K4Q9Y6R4 1608 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 GLI3P10071 1580 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 NWD1Q149M9 1564 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 AGLP35573 1532 aa0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms