RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 IZUMO4Q1ZYL8 232 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 TRIQKQ629K1 86 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 OR1L8Q8NGR8 309 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 OR4A16Q8NH70 328 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 USMG5Q96IX5 58 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 TSC22D3Q99576 134 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 NAA60Q9H7X0 242 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 PRNDQ9UKY0 176 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 TRBV9A0A0B4J1U6 114 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 IGLC7A0M8Q6 106 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 FAM223BA6NKX1 122 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 DBX1A6NMT0 343 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 C15orf61A6NNL5 157 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 SEC14L6B5MCN3 397 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 DHFRP00374 187 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 FGF2P09038 288 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 CTRB1P17538 263 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 MECP2P51608 486 aaKnown RBP11.38□□□□□ -0.59
USP4-212ENST00000486549 ATP5G2Q06055 141 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 EXOSC2Q13868 293 aaKnown RBP11.38□□□□□ -0.59
USP4-212ENST00000486549 BAK1Q16611 211 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 CTRB2Q6GPI1 263 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 FAM223AQ8IWN6 122 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 GDPD1Q8N9F7 314 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 RNASE11Q8TAA1 199 aaKnown RBP11.38□□□□□ -0.59
USP4-212ENST00000486549 DCUN1D4Q92564 292 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 DLX4Q92988 240 aaPredicted RBP11.38□□□□□ -0.59
USP4-212ENST00000486549 SCGB3A2Q96PL1 93 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 RANGRFQ9HD47 186 aaPredicted RBP11.38□□□□□ -0.59
USP4-212ENST00000486549 ZMAT5Q9UDW3 170 aaKnown RBP11.38□□□□□ -0.59
USP4-212ENST00000486549 FBXL7Q9UJT9 491 aa11.38□□□□□ -0.59
USP4-212ENST00000486549 LINC00854A0A1B0GVQ3 168 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 CRYM-AS1A6NIL9 109 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 OVOL1O14753 267 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 ATG12O94817 140 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 IGKV1-5P01602 117 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 TRBV12-3P01733 135 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 CRYGCP07315 174 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 OR13C7P0DN81 318 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 UCP1P25874 307 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 C15orf32Q32M92 178 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 THOC7Q6I9Y2 204 aaKnown RBP11.37□□□□□ -0.59
USP4-212ENST00000486549 ZNF343Q6P1L6 599 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 SGPP2Q8IWX5 399 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 CADM3Q8N126 398 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 NECAP1Q8NC96 275 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 TMEM230Q96A57 120 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 TMEM222Q9H0R3 208 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 NDUFA4L2Q9NRX3 87 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 TMEM14BQ9NUH8 114 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 FKBP11Q9NYL4 201 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 PEF1Q9UBV8 284 aaKnown RBP11.37□□□□□ -0.59
USP4-212ENST00000486549 S4R3C0 116 aa11.37□□□□□ -0.59
USP4-212ENST00000486549 B3GALNT1O75752 331 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 NDUFB8O95169 186 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 IGHV3-23P01764 117 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 AKR1C4P17516 323 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 WT1-ASQ06250 92 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 CNPY1Q3B7I2 92 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 C9orf66Q5T8R8 295 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 TMED4Q7Z7H5 227 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 OR5B3Q8NH48 314 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 LSM10Q969L4 123 aaKnown RBP11.36□□□□□ -0.59
USP4-212ENST00000486549 RRNAD1Q96FB5 475 aaKnown RBP11.36□□□□□ -0.59
USP4-212ENST00000486549 FANCD2OSQ96PS1 177 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 SDHCQ99643 169 aaPredicted RBP11.36□□□□□ -0.59
USP4-212ENST00000486549 SRSF8Q9BRL6 282 aaKnown RBP11.36□□□□□ -0.59
USP4-212ENST00000486549 PRR13Q9NZ81 148 aa11.36□□□□□ -0.59
USP4-212ENST00000486549 A0A0G2JRQ6 117 aa11.35□□□□□ -0.59
USP4-212ENST00000486549 A6NHS1 94 aa11.35□□□□□ -0.59
USP4-212ENST00000486549 HIST1H1BP16401 226 aaKnown RBP11.35□□□□□ -0.59
USP4-212ENST00000486549 DHODHQ02127 395 aa11.35□□□□□ -0.59
USP4-212ENST00000486549 SPINK9Q5DT21 86 aa11.35□□□□□ -0.59
USP4-212ENST00000486549 HSD17B13Q7Z5P4 300 aaPredicted RBP11.35□□□□□ -0.59
USP4-212ENST00000486549 LHFPL5Q8TAF8 219 aa11.35□□□□□ -0.59
USP4-212ENST00000486549 MRAPQ8TCY5 172 aa11.35□□□□□ -0.59
USP4-212ENST00000486549 GLYATL2Q8WU03 294 aa11.35□□□□□ -0.59
USP4-212ENST00000486549 DEDD2Q8WXF8 326 aa11.35□□□□□ -0.59
USP4-212ENST00000486549 TMEM56Q96MV1 263 aa11.35□□□□□ -0.59
USP4-212ENST00000486549 TGP01266 2768 aa11.34□□□□□ -0.59
USP4-212ENST00000486549 IGLV11-55A0A075B6I3 123 aa11.34□□□□□ -0.59
USP4-212ENST00000486549 CDS2O95674 445 aa11.34□□□□□ -0.59
USP4-212ENST00000486549 P0C879 139 aa11.34□□□□□ -0.59
USP4-212ENST00000486549 ZP3P21754 424 aa11.34□□□□□ -0.59
USP4-212ENST00000486549 CCR6P51684 374 aa11.34□□□□□ -0.59
USP4-212ENST00000486549 KRTAP10-11P60412 298 aa11.34□□□□□ -0.59
USP4-212ENST00000486549 TMEM268Q5VZI3 342 aa11.34□□□□□ -0.59
USP4-212ENST00000486549 SELENOHQ8IZQ5 122 aaKnown RBP11.34□□□□□ -0.59
USP4-212ENST00000486549 RBPMSQ93062 196 aaKnown RBP11.34□□□□□ -0.59
USP4-212ENST00000486549 AURKAIP1Q9NWT8 199 aaPredicted RBP11.34□□□□□ -0.59
USP4-212ENST00000486549 KCNIP3Q9Y2W7 256 aa11.34□□□□□ -0.59
USP4-212ENST00000486549 DNAH3Q8TD57 4116 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 A0A0B4J293 547 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 MFSD2BA6NFX1 497 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 PPP5D1E7EU14 171 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 CYB5BO43169 146 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 SAP30O75446 220 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 IL7P13232 177 aa11.33□□□□□ -0.6
USP4-212ENST00000486549 HSPE1P61604 102 aaKnown RBP11.33□□□□□ -0.6
USP4-212ENST00000486549 PRCDQ00LT1 54 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms