RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 PDLIM3Q53GG5 364 aaPredicted RBP13.13□□□□□ -0.31
SCAF11-206ENST00000474828 LSM10Q969L4 123 aaKnown RBP13.13□□□□□ -0.31
SCAF11-206ENST00000474828 GNB4Q9HAV0 340 aa13.13□□□□□ -0.31
SCAF11-206ENST00000474828 A0A0G2JRQ6 117 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 HMX3A6NHT5 357 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 LYRM1O43325 122 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 WIPF1O43516 503 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 RBMXL2O75526 392 aaKnown RBP13.12□□□□□ -0.31
SCAF11-206ENST00000474828 TRAPPC2P0DI81 140 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 TRAPPC2BP0DI82 140 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 AREGP15514 252 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 HSPE1P61604 102 aaKnown RBP13.12□□□□□ -0.31
SCAF11-206ENST00000474828 SRPXP78539 464 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 C8orf86Q6ZUL3 223 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 KLHL30-AS1Q8NEE0 82 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 RAX2Q96IS3 184 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 USMG5Q96IX5 58 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 FANCD2OSQ96PS1 177 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 FYTTD1Q96QD9 318 aaKnown RBP13.12□□□□□ -0.31
SCAF11-206ENST00000474828 PHB2Q99623 299 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 ALX4Q9H161 411 aaPredicted RBP13.12□□□□□ -0.31
SCAF11-206ENST00000474828 TBC1D24Q9ULP9 559 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 OR51B2Q9Y5P1 312 aa13.12□□□□□ -0.31
SCAF11-206ENST00000474828 PIGBOS1A0A0B4J2F0 54 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 A0A1W2PRX2 142 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 FAM223BA6NKX1 122 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 UPK1BO75841 260 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 LGALS1P09382 135 aaKnown RBP13.11□□□□□ -0.31
SCAF11-206ENST00000474828 AKR1C4P17516 323 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 MECP2P51608 486 aaKnown RBP13.11□□□□□ -0.31
SCAF11-206ENST00000474828 IFITM3Q01628 133 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 WT1-ASQ06250 92 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 ASAH1Q13510 395 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 TRIM16LQ309B1 348 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 Q6ZRM9 215 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 FAM223AQ8IWN6 122 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 CENPSQ8N2Z9 138 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 LINC00482Q8N8I6 264 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 CASTOR1Q8WTX7 329 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 NSG2Q9Y328 171 aa13.11□□□□□ -0.31
SCAF11-206ENST00000474828 IGLV11-55A0A075B6I3 123 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 A0A0B4J2A0 478 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 A0A0G2JLM5 398 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 DUXBA0A1W2PPF3 345 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 TRGV3P03979 118 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 APELAP0DMC3 54 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 ANXA3P12429 323 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 PRCDQ00LT1 54 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 NMSQ5H8A3 153 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 KHDC1LQ5JSQ8 128 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 ZNF343Q6P1L6 599 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 NECAP1Q8NC96 275 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 OR4A16Q8NH70 328 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 MS4A10Q96PG2 267 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 COA4Q9NYJ1 87 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 SHPKQ9UHJ6 478 aa13.1□□□□□ -0.31
SCAF11-206ENST00000474828 CCL24O00175 119 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 SFT2D2O95562 160 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 AKR1C2P52895 323 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 TPPP2P59282 170 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 PPP1R1AQ13522 171 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 IZUMO4Q1ZYL8 232 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 TMEM268Q5VZI3 342 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 PVRIGQ6DKI7 326 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 TMED4Q7Z7H5 227 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 MRPL41Q8IXM3 137 aaKnown RBP13.09□□□□□ -0.31
SCAF11-206ENST00000474828 SLC35G3Q8N808 338 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 ZNF114Q8NC26 417 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 OR10W1Q8NGF6 305 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 OR52E5Q8NH55 327 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 RRNAD1Q96FB5 475 aaKnown RBP13.09□□□□□ -0.31
SCAF11-206ENST00000474828 DMRT1Q9Y5R6 373 aa13.09□□□□□ -0.31
SCAF11-206ENST00000474828 LINC00854A0A1B0GVQ3 168 aa13.08□□□□□ -0.32
SCAF11-206ENST00000474828 NUDT19A8MXV4 375 aa13.08□□□□□ -0.32
SCAF11-206ENST00000474828 DHFRP00374 187 aa13.08□□□□□ -0.32
SCAF11-206ENST00000474828 HIST1H1BP16401 226 aaKnown RBP13.08□□□□□ -0.32
SCAF11-206ENST00000474828 ANKRD55Q3KP44 614 aa13.08□□□□□ -0.32
SCAF11-206ENST00000474828 LGI3Q8N145 548 aa13.08□□□□□ -0.32
SCAF11-206ENST00000474828 GPR146Q96CH1 333 aa13.08□□□□□ -0.32
SCAF11-206ENST00000474828 CACFD1Q9UGQ2 172 aa13.08□□□□□ -0.32
SCAF11-206ENST00000474828 FLVCR2Q9UPI3 526 aa13.08□□□□□ -0.32
SCAF11-206ENST00000474828 MEGF8Q7Z7M0 2845 aa13.08□□□□□ -0.32
SCAF11-206ENST00000474828 C9orf170A2RU37 121 aa13.07□□□□□ -0.32
SCAF11-206ENST00000474828 ST8SIA3O43173 380 aa13.07□□□□□ -0.32
SCAF11-206ENST00000474828 TCRBP04435 133 aa13.07□□□□□ -0.32
SCAF11-206ENST00000474828 RHOGP84095 191 aa13.07□□□□□ -0.32
SCAF11-206ENST00000474828 LYZL2Q7Z4W2 148 aa13.07□□□□□ -0.32
SCAF11-206ENST00000474828 OR2C3Q8N628 320 aa13.07□□□□□ -0.32
SCAF11-206ENST00000474828 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.07□□□□□ -0.32
SCAF11-206ENST00000474828 F11RQ9Y624 299 aaKnown RBP13.07□□□□□ -0.32
SCAF11-206ENST00000474828 DUS4LO95620 317 aaKnown RBP13.06□□□□□ -0.32
SCAF11-206ENST00000474828 PRH1P02810 166 aa13.06□□□□□ -0.32
SCAF11-206ENST00000474828 HSPB1P04792 205 aaKnown RBP13.06□□□□□ -0.32
SCAF11-206ENST00000474828 OR4E1P0C645 316 aa13.06□□□□□ -0.32
SCAF11-206ENST00000474828 OR13C7P0DN81 318 aa13.06□□□□□ -0.32
SCAF11-206ENST00000474828 SLC25A6P12236 298 aa13.06□□□□□ -0.32
SCAF11-206ENST00000474828 ZNF616Q08AN1 781 aa13.06□□□□□ -0.32
SCAF11-206ENST00000474828 DEFB136Q30KP8 78 aa13.06□□□□□ -0.32
SCAF11-206ENST00000474828 BSXQ3C1V8 233 aa13.06□□□□□ -0.32
SCAF11-206ENST00000474828 FAM209BQ5JX69 171 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms