RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CA7P43166 264 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 OR10J3Q5JRS4 329 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 FAM169BQ8N8A8 192 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 TNFRSF12AQ9NP84 129 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 COL24A1Q17RW2 1714 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 SPINT1O43278 529 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 CD8AP01732 235 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 VSIG8P0DPA2 414 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 OSR1Q8TAX0 266 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-204ENST00000423058 RNASEH2CQ8TDP1 164 aaKnown RBP5.85□□□□□ -1.47
SCN1A-204ENST00000423058 MS4A3Q96HJ5 214 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 WFIKKN1Q96NZ8 548 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 PEX7O00628 323 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 HSPB1P04792 205 aaKnown RBP5.85□□□□□ -1.47
SCN1A-204ENST00000423058 NSUN5P1Q3KNT7 163 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 FAM90A1Q86YD7 464 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 GGACTQ9BVM4 153 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 TRGV11A0A075B6L2 103 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 F8WEM9 126 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 RARRES2Q99969 163 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 C7orf77A4D0Y5 90 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 EFEMP2O95967 443 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 COX6A1P12074 109 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF506Q5JVG8 444 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 ALX4Q9H161 411 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-204ENST00000423058 CST9LQ9H4G1 147 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 AURKAIP1Q9NWT8 199 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-204ENST00000423058 PRR13Q9NZ81 148 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 PCNX1Q96RV3 2341 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 NAPSAO96009 420 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF600Q6ZNG1 722 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 C21orf62Q9NYP8 219 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 F11RQ9Y624 299 aaKnown RBP5.85□□□□□ -1.47
SCN1A-204ENST00000423058 ADARB2-AS1A8MUL3 147 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 PGLYRP1O75594 196 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF415Q09FC8 603 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF826PQ6ZT77 177 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 FAM89BQ8N5H3 189 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 CYB561D1Q8N8Q1 229 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 OR5AN1Q8NGI8 311 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 SLC25A2Q9BXI2 301 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 LY75O60449 1722 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 MIC13Q5XKP0 118 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 C3orf56Q8N813 242 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 GATAD1Q8WUU5 269 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 SMIM8Q96KF7 97 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 ASCL2Q99929 193 aa5.85□□□□□ -1.47
SCN1A-204ENST00000423058 SPAG8Q99932 426 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-204ENST00000423058 GPR183P32249 361 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 SLC25A47Q6Q0C1 308 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 A0A1W2PQF6 199 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 MOSPD3O75425 235 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 CD7P09564 240 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 CLEC19AQ6UXS0 136 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 RNF114Q9Y508 228 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 SLC25A15Q9Y619 301 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 ASPDHA6ND91 283 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 ICAM4Q14773 271 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 ISOC2Q96AB3 205 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 LINC01549A6NIU2 74 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 OR10S1Q8NGN2 331 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 FOXA2Q9Y261 457 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-204ENST00000423058 SIRT4Q9Y6E7 314 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-204ENST00000423058 PRR32B1ATL7 298 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-204ENST00000423058 AGAP20933 346 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 IGFBP6P24592 240 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-204ENST00000423058 RPL32P62910 135 aaKnown RBP5.84□□□□□ -1.47
SCN1A-204ENST00000423058 SELENOHQ8IZQ5 122 aaKnown RBP5.84□□□□□ -1.47
SCN1A-204ENST00000423058 VKORC1L1Q8N0U8 176 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 SLC22A18ASQ8N1D0 253 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 TEX45Q8NA69 505 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 OR5A1Q8NGJ0 315 aa5.84□□□□□ -1.47
SCN1A-204ENST00000423058 SP7Q8TDD2 431 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-204ENST00000423058 A0A1W2PPV9 198 aa5.84□□□□□ -1.48
SCN1A-204ENST00000423058 FOXS1O43638 330 aa5.84□□□□□ -1.48
SCN1A-204ENST00000423058 NCMAPQ5T1S8 102 aa5.84□□□□□ -1.48
SCN1A-204ENST00000423058 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.83□□□□□ -1.488e-7■■■■□ 21.2
SCN1A-204ENST00000423058 TRAV21A0A0B4J279 112 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 IGF2P01344 180 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 UNC119Q13432 240 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 SLC50A1Q9BRV3 221 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 ST20Q9HBF5 79 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 NRN1Q9NPD7 142 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 A0A087WX48 190 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 PROB1E7EW31 1015 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 PLNP26678 52 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 MVDP53602 400 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 PEAR1Q5VY43 1037 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-204ENST00000423058 KLK13Q9UKR3 277 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 TCF19Q9Y242 345 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 SNAI3Q3KNW1 292 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 ST6GAL2Q96JF0 529 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 SDHCQ99643 169 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-204ENST00000423058 NABP2Q9BQ15 211 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 C1QTNF4Q9BXJ3 329 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 PARLQ9H300 379 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 NYNRINQ9P2P1 1898 aaKnown RBP5.83□□□□□ -1.48
SCN1A-204ENST00000423058 LOC101059948A0A1B0GTJ6 334 aa5.83□□□□□ -1.48
SCN1A-204ENST00000423058 A0A1B0GUT8 65 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms