RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 HINT2Q9BX68 163 aa9.68□□□□□ -0.86
SKA1-203ENST00000417656 QTRT1Q9BXR0 403 aaKnown RBP9.68□□□□□ -0.86
SKA1-203ENST00000417656 WDR12Q9GZL7 423 aaKnown RBP9.68□□□□□ -0.86
SKA1-203ENST00000417656 ZNF257Q9Y2Q1 563 aa9.68□□□□□ -0.86
SKA1-203ENST00000417656 OR51B2Q9Y5P1 312 aa9.68□□□□□ -0.86
SKA1-203ENST00000417656 MGAM2Q2M2H8 2515 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 TEX50A0A1B0GTY4 177 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 CENPXA8MT69 81 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 I3L521 148 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 CCL24O00175 119 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 PLA2G10O15496 165 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 ATG12O94817 140 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 NDUFB6O95139 128 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 CDS2O95674 445 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 PSMB6P28072 239 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 MYCNOSP40205 109 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 RHOGP84095 191 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 DHODHQ02127 395 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 TMEM187Q14656 261 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 TMEM268Q5VZI3 342 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 SLC25A42Q86VD7 318 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 MRPL41Q8IXM3 137 aaKnown RBP9.67□□□□□ -0.86
SKA1-203ENST00000417656 SELENOHQ8IZQ5 122 aaKnown RBP9.67□□□□□ -0.86
SKA1-203ENST00000417656 LINC00482Q8N8I6 264 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 OR10W1Q8NGF6 305 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 OR1L8Q8NGR8 309 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 OR4A16Q8NH70 328 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 RBPMSQ93062 196 aaKnown RBP9.67□□□□□ -0.86
SKA1-203ENST00000417656 GALNT14Q96FL9 552 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 P2RX4Q99571 388 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 TMEM14BQ9NUH8 114 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 FBN3Q75N90 2809 aa9.67□□□□□ -0.86
SKA1-203ENST00000417656 CMYA5Q8N3K9 4069 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 C13orf42A0A1B0GVH6 325 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 LYRM1O43325 122 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 BRI3O95415 125 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 TRAPPC2P0DI81 140 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 TRAPPC2BP0DI82 140 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 CTRB1P17538 263 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 CD33P20138 364 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 VAMP1P23763 118 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 RAB25P57735 213 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 RUNX1Q01196 453 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 FHL3Q13643 280 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 ZNF846Q147U1 533 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 CTRB2Q6GPI1 263 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 THOC7Q6I9Y2 204 aaKnown RBP9.66□□□□□ -0.86
SKA1-203ENST00000417656 CENPSQ8N2Z9 138 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 OR5B3Q8NH48 314 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 LSM10Q969L4 123 aaKnown RBP9.66□□□□□ -0.86
SKA1-203ENST00000417656 RRNAD1Q96FB5 475 aaKnown RBP9.66□□□□□ -0.86
SKA1-203ENST00000417656 NDUFA4L2Q9NRX3 87 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 FLVCR2Q9UPI3 526 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 KCNIP3Q9Y2W7 256 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 NBEAL1Q6ZS30 2694 aa9.66□□□□□ -0.86
SKA1-203ENST00000417656 IGHV4OR15-8A0A075B7B6 117 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 A0A087WW49 117 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 OR2J3O76001 311 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 CRYGCP07315 174 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 ANXA3P12429 323 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 MECP2P51608 486 aaKnown RBP9.65□□□□□ -0.86
SKA1-203ENST00000417656 WT1-ASQ06250 92 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 PPP1R1AQ13522 171 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 TMEM128Q5BJH2 165 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 SPINK9Q5DT21 86 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 SLC35G3Q8N808 338 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 OR11H1Q8NG94 326 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 OR1N2Q8NGR9 330 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 IL22RA2Q969J5 263 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 TMEM56Q96MV1 263 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 SRSF8Q9BRL6 282 aaKnown RBP9.65□□□□□ -0.86
SKA1-203ENST00000417656 FKBP11Q9NYL4 201 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 TBC1D24Q9ULP9 559 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 TMEM56-RWDD3S4R434 201 aa9.65□□□□□ -0.86
SKA1-203ENST00000417656 TRBV9A0A0B4J1U6 114 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 A0A0B4J293 547 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 A0A0G2JLM5 398 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 FAM223BA6NKX1 122 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 ST8SIA3O43173 380 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 OR13C7P0DN81 318 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 SRPXP78539 464 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 PRCDQ00LT1 54 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 ZNF616Q08AN1 781 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 EXOSC2Q13868 293 aaKnown RBP9.64□□□□□ -0.87
SKA1-203ENST00000417656 Q6ZRM9 215 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 HSD17B13Q7Z5P4 300 aaPredicted RBP9.64□□□□□ -0.87
SKA1-203ENST00000417656 C1QL4Q86Z23 238 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 FAM219AQ8IW50 185 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 FAM223AQ8IWN6 122 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 GPR146Q96CH1 333 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 FANCD2OSQ96PS1 177 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 C20orf85Q9H1P6 137 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 CACNG5Q9UF02 275 aa9.64□□□□□ -0.87
SKA1-203ENST00000417656 IGLV11-55A0A075B6I3 123 aa9.63□□□□□ -0.87
SKA1-203ENST00000417656 ANKRD34BA5PLL1 514 aa9.63□□□□□ -0.87
SKA1-203ENST00000417656 G3V4G9 280 aa9.63□□□□□ -0.87
SKA1-203ENST00000417656 UPK1BO75841 260 aa9.63□□□□□ -0.87
SKA1-203ENST00000417656 SFT2D2O95562 160 aa9.63□□□□□ -0.87
SKA1-203ENST00000417656 DHFRP00374 187 aa9.63□□□□□ -0.87
SKA1-203ENST00000417656 OR8U8P0C7N1 319 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms