RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 RAX2Q96IS3 184 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 TMEM14BQ9NUH8 114 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 FKBP11Q9NYL4 201 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 ZNF257Q9Y2Q1 563 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 NBEAL1Q6ZS30 2694 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 NPIPB5A8MRT5 1133 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 LYRM1O43325 122 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 NDUFB6O95139 128 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 P0C879 139 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 PSMB6P28072 239 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 THOC7Q6I9Y2 204 aaKnown RBP12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 SELENOHQ8IZQ5 122 aaKnown RBP12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 OR10W1Q8NGF6 305 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 ALX4Q9H161 411 aaPredicted RBP12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 WNK1Q9H4A3 2382 aa12.33□□□□□ -0.43
CCDC28A-201ENST00000332797 C13orf42A0A1B0GVH6 325 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 IGLC7A0M8Q6 106 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 I3L521 148 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 CCL24O00175 119 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 BRI3O95415 125 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 VAMP1P23763 118 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 MYCNOSP40205 109 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 TMEM128Q5BJH2 165 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 OR5B3Q8NH48 314 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 TMEM56Q96MV1 263 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 NDUFA4L2Q9NRX3 87 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 FLVCR2Q9UPI3 526 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 TMEM56-RWDD3S4R434 201 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 MGAM2Q2M2H8 2515 aa12.33□□□□□ -0.44
CCDC28A-201ENST00000332797 A0A0G2JLM5 398 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 A0A0G2JRQ6 117 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 LGALS1P09382 135 aaKnown RBP12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 DEFA4P12838 97 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 CTRB1P17538 263 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 CD33P20138 364 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 MECP2P51608 486 aaKnown RBP12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 RAB25P57735 213 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 RHOGP84095 191 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 RUNX1Q01196 453 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 CTRB2Q6GPI1 263 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 SLC35G3Q8N808 338 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 OR11H1Q8NG94 326 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 IL22RA2Q969J5 263 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 LSM10Q969L4 123 aaKnown RBP12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 SRSF8Q9BRL6 282 aaKnown RBP12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 FBN3Q75N90 2809 aa12.32□□□□□ -0.44
CCDC28A-201ENST00000332797 A0A0B4J293 547 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 OR2J3O76001 311 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 DHFRP00374 187 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 CRYGCP07315 174 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 OR13C7P0DN81 318 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 SRPXP78539 464 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 WT1-ASQ06250 92 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 PPP1R1AQ13522 171 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 FAM219AQ8IW50 185 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 MRPL41Q8IXM3 137 aaKnown RBP12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 LGI3Q8N145 548 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 LINC00482Q8N8I6 264 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 OR1N2Q8NGR9 330 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 P2RX4Q99571 388 aa12.31□□□□□ -0.44
CCDC28A-201ENST00000332797 TRBV9A0A0B4J1U6 114 aa12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 FAM223BA6NKX1 122 aa12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 UPK1BO75841 260 aa12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 HSPE1P61604 102 aaKnown RBP12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 SPINK9Q5DT21 86 aa12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 HSD17B13Q7Z5P4 300 aaPredicted RBP12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 ZNF429Q86V71 674 aa12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 FAM223AQ8IWN6 122 aa12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 USMG5Q96IX5 58 aa12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 TBC1D24Q9ULP9 559 aa12.3□□□□□ -0.44
CCDC28A-201ENST00000332797 ST8SIA3O43173 380 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 SFT2D2O95562 160 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 UBE2MP61081 183 aaKnown RBP12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 PRCDQ00LT1 54 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 ATP5G2Q06055 141 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 ZNF616Q08AN1 781 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 Q6ZRM9 215 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 LYZL2Q7Z4W2 148 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 NECAP1Q8NC96 275 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 DPF1Q92782 380 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 GPR146Q96CH1 333 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 PDCD10Q9BUL8 212 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 C20orf85Q9H1P6 137 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 CACNG5Q9UF02 275 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 FBXL7Q9UJT9 491 aa12.29□□□□□ -0.44
CCDC28A-201ENST00000332797 IGHV4OR15-8A0A075B7B6 117 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 A0A087WW49 117 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 A0A0B4J2A0 478 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 ANKRD34BA5PLL1 514 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 IFNA17P01571 189 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 HIST1H1BP16401 226 aaKnown RBP12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 ANXA7P20073 488 aaKnown RBP12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 ASAH1Q13510 395 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 FHL3Q13643 280 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 EXOSC2Q13868 293 aaKnown RBP12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 ANKRD55Q3KP44 614 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 FANCD2OSQ96PS1 177 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 PLEKHA3Q9HB20 300 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 SHPKQ9UHJ6 478 aa12.28□□□□□ -0.44
CCDC28A-201ENST00000332797 IGLV11-55A0A075B6I3 123 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms