RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 SGMS2Q8NHU3 365 aa13.11□□□□□ -0.31
USH1C-202ENST00000318024 IGLV3-9A0A075B6K5 115 aa13.1□□□□□ -0.31
USH1C-202ENST00000318024 C17orf98A8MV24 154 aa13.1□□□□□ -0.31
USH1C-202ENST00000318024 F6UZH7 168 aa13.1□□□□□ -0.31
USH1C-202ENST00000318024 RPL29P47914 159 aaKnown RBP13.1□□□□□ -0.31
USH1C-202ENST00000318024 RPS16P62249 146 aaKnown RBP13.1□□□□□ -0.31
USH1C-202ENST00000318024 CYB5R2Q6BCY4 276 aa13.1□□□□□ -0.31
USH1C-202ENST00000318024 FAM53AQ6NSI3 398 aaPredicted RBP13.1□□□□□ -0.31
USH1C-202ENST00000318024 ZCCHC24Q8N2G6 241 aaKnown RBP13.1□□□□□ -0.31
USH1C-202ENST00000318024 NEUROG1Q92886 237 aa13.1□□□□□ -0.31
USH1C-202ENST00000318024 SDSLQ96GA7 329 aa13.1□□□□□ -0.31
USH1C-202ENST00000318024 OR2V2Q96R30 315 aa13.1□□□□□ -0.31
USH1C-202ENST00000318024 USP24Q9UPU5 2620 aa13.1□□□□□ -0.31
USH1C-202ENST00000318024 CLDN14O95500 239 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 IRF2P14316 349 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 CD33P20138 364 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 OR3A1P47881 315 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 COMPP49747 757 aaPredicted RBP13.09□□□□□ -0.31
USH1C-202ENST00000318024 SELENOVP59797 346 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 ZNF816Q0VGE8 651 aaPredicted RBP13.09□□□□□ -0.31
USH1C-202ENST00000318024 ZNF709Q8N972 641 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 CMTM2Q8TAZ6 248 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 PLPPR2Q96GM1 343 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 CIB3Q96Q77 187 aaPredicted RBP13.09□□□□□ -0.31
USH1C-202ENST00000318024 MIEN1Q9BRT3 115 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 C17orf112F2Z3M2 114 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 GNLYP22749 145 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 PAFAH1B2P68402 229 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 COTL1Q14019 142 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 NUP37Q8NFH4 326 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 RNASE6Q93091 150 aaKnown RBP13.09□□□□□ -0.31
USH1C-202ENST00000318024 LRBAP50851 2863 aa13.09□□□□□ -0.31
USH1C-202ENST00000318024 TRAV38-1A0A0B4J264 116 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 PRSS47A8MTI9 375 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 RPLP1P05386 114 aaKnown RBP13.08□□□□□ -0.32
USH1C-202ENST00000318024 UBE2G2P60604 165 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 ADIPOQQ15848 244 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 Q8IYB0 196 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 OR2D2Q9H210 308 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 GRIFINA4D1Z8 144 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 NPSP0C0P6 89 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 AARDQ4LEZ3 155 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 CST9LP1Q5W188 147 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 ITLN1Q8WWA0 313 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 TXNDC17Q9BRA2 123 aa13.08□□□□□ -0.32
USH1C-202ENST00000318024 TRAV9-1A0A075B6T8 112 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.07□□□□□ -0.32
USH1C-202ENST00000318024 ZNF705FA8MVS1 300 aaPredicted RBP13.07□□□□□ -0.32
USH1C-202ENST00000318024 PLAUP00749 431 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 ZNF705DP0CH99 300 aaPredicted RBP13.07□□□□□ -0.32
USH1C-202ENST00000318024 ZNF705BP0CI00 300 aaPredicted RBP13.07□□□□□ -0.32
USH1C-202ENST00000318024 BRS3P32247 399 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 MOGAT3Q86VF5 341 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 LRRC29Q8WV35 223 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 NGBQ9NPG2 151 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 PKDREJQ9NTG1 2253 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 HIVEP3Q5T1R4 2406 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 A6NNC1 897 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 C12orf77C9JDV5 145 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 PSPNO60542 156 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 ZNF705AQ6ZN79 300 aaPredicted RBP13.07□□□□□ -0.32
USH1C-202ENST00000318024 OCC1Q8TAD7 63 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 GOLT1BQ9Y3E0 138 aa13.07□□□□□ -0.32
USH1C-202ENST00000318024 ZFYVE26Q68DK2 2539 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 SHISA9B4DS77 424 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 IGHV1-46P01743 117 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 STAG3L2P0CL84 134 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 STAG3L3P0CL85 134 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 CD1BP29016 333 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 FBXL19-AS1Q494R0 122 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 FAM201AQ5SY85 155 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 TCTEX1D1Q8N7M0 179 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 OR52L2PQ8NGH6 319 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 NCOR1P1Q9H4R4 102 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 HES4Q9HCC6 221 aa13.06□□□□□ -0.32
USH1C-202ENST00000318024 MDFIC2A0A1B0GVS7 189 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 PRSS46E5RG02 174 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 RRHO14718 337 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 SH2D1BO14796 132 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 HAND1O96004 215 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 CDKN1AP38936 164 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 TPPP2P59282 170 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 CCL8P80075 99 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 MRPS11P82912 194 aaKnown RBP13.05□□□□□ -0.32
USH1C-202ENST00000318024 CATR1Q13166 79 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 SPINK9Q5DT21 86 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 TOMM20LQ6UXN7 152 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 ACP7Q6ZNF0 438 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 ZNF808Q8N4W9 903 aaPredicted RBP13.05□□□□□ -0.32
USH1C-202ENST00000318024 Q8N976 141 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 SPTBN1Q01082 2364 aaKnown RBP13.05□□□□□ -0.32
USH1C-202ENST00000318024 SCO2A0A1W2PP80 73 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 LINC00473A8K010 186 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 E7EQL1 145 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 SIAH2O43255 324 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 SERF1AO75920 110 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 LINC00614P0C842 121 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 TNFAIP6P98066 277 aaPredicted RBP13.05□□□□□ -0.32
USH1C-202ENST00000318024 Q0VG73 95 aa13.05□□□□□ -0.32
USH1C-202ENST00000318024 OR10G8Q8NGN5 311 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms