RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PDE6HQ13956 83 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 GNA13Q14344 377 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CLEC12BQ2HXU8 276 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 HLA-DRB5Q30154 266 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 IBA57Q5T440 356 aaKnown RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 GDF5OSQ5U4N7 250 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SYPL2Q5VXT5 272 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 FAM45BPQ6NSW5 357 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SBSNQ6UWP8 590 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 ZNF826PQ6ZT77 177 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 RASSF6Q6ZTQ3 369 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SSX8Q7RTT4 187 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 ZNF550Q7Z398 422 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 FAM19A5Q7Z5A7 132 aaPredicted RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SPATA24Q86W54 205 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 LRRC6Q86X45 466 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SLC13A5Q86YT5 568 aaPredicted RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SLC22A24Q8N4F4 322 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 Q8N814 137 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 OR7G1Q8NGA0 311 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 OR1M1Q8NGA1 313 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 OR4C6Q8NH72 309 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 PFN4Q8NHR9 129 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 HAVCR2Q8TDQ0 301 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SLC37A2Q8TED4 501 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 RAB2BQ8WUD1 216 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 IFT81Q8WYA0 676 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TMA16Q96EY4 203 aaKnown RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 PACRGQ96M98 296 aaPredicted RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 AMELYQ99218 206 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CCL13Q99616 98 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TMEM109Q9BVC6 243 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 MROQ9BYG7 248 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 YIPF3Q9GZM5 350 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SLC22A4Q9H015 551 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 NSRP1Q9H0G5 558 aaKnown RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 MS4A6AQ9H2W1 248 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 HES4Q9HCC6 221 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 XAGE1AQ9HD64 81 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 HRASLSQ9HDD0 168 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CISHQ9NSE2 258 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 EURLQ9NYK6 297 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CD300AQ9UGN4 299 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 RSL24D1Q9UHA3 163 aaKnown RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 PRELID1Q9Y255 219 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 HDGFL3Q9Y3E1 203 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TIMM22Q9Y584 194 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TIMM9Q9Y5J7 89 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 CELSR2Q9HCU4 2923 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TET1Q8NFU7 2136 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 TNRC6BQ9UPQ9 1833 aaKnown RBP-0.13□□□□□ -2.43
VPS35-212ENST00000640313 POLQO75417 2590 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 NUP160Q12769 1436 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 SYNRGQ9UMZ2 1314 aa-0.13□□□□□ -2.43
VPS35-212ENST00000640313 FLNAP21333 2647 aaKnown RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 THSD7AQ9UPZ6 1657 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 PCLOQ9Y6V0 5065 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 PKD1P98161 4303 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 STAB1Q9NY15 2570 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 A0A1W2PP64 1363 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 FLT4P35916 1363 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 LRPPRCP42704 1394 aaKnown RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 KIF15Q9NS87 1388 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 TRAV14DV4A0A0A6YYC5 116 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 C1orf232A0A0U1RR37 186 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 A0A1W2PPM0 123 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 RAB19A4D1S5 217 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 GOLGA6L19H0YKK7 550 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 I3L521 148 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 LIN7AO14910 233 aaPredicted RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 TOX3O15405 576 aaPredicted RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 FADS1O60427 444 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 HMMRO75330 724 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 LYZL6O75951 148 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 TNFAIP8O95379 198 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 YEATS4O95619 227 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 IGHV3-7P01780 117 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 C1QAP02745 245 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ORM1P02763 201 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 IL6P05231 212 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 REG1AP05451 166 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ASAH2BP0C7U1 165 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 FAM228BP0C875 321 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SULT1A3P0DMM9 295 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SULT1A4P0DMN0 295 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 FGF6P10767 208 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 MIFP14174 115 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ZNF25P17030 456 aaPredicted RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 MSNP26038 577 aaKnown RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 KDELR2P33947 212 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SLCO1A2P46721 670 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 CD151P48509 253 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SPINK7P58062 85 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 CXCR4P61073 352 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 CCL20P78556 96 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 RPL18Q07020 188 aaKnown RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 DMTNQ08495 405 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SMAGPQ0VAQ4 97 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 STX5Q13190 355 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 EBPQ15125 230 aaKnown RBP-0.14□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms