RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 MARCH11A6NNE9 402 aa10.71□□□□□ -0.69
UPF1-205ENST00000598209 PRB2P02812 416 aaPredicted RBP10.71□□□□□ -0.69
UPF1-205ENST00000598209 AKAIN1P0CW23 69 aa10.71□□□□□ -0.69
UPF1-205ENST00000598209 S100A5P33763 92 aa10.71□□□□□ -0.69
UPF1-205ENST00000598209 G6PCP35575 357 aa10.71□□□□□ -0.69
UPF1-205ENST00000598209 RND3P61587 244 aa10.71□□□□□ -0.69
UPF1-205ENST00000598209 DEFA5Q01523 94 aa10.71□□□□□ -0.69
UPF1-205ENST00000598209 PDLIM3Q53GG5 364 aaPredicted RBP10.71□□□□□ -0.69
UPF1-205ENST00000598209 SLC25A42Q86VD7 318 aa10.71□□□□□ -0.69
UPF1-205ENST00000598209 TTC9CQ8N5M4 171 aa10.71□□□□□ -0.69
UPF1-205ENST00000598209 OR4C16Q8NGL9 310 aa10.71□□□□□ -0.69
UPF1-205ENST00000598209 FAM212BQ9NTI7 297 aaPredicted RBP10.71□□□□□ -0.69
UPF1-205ENST00000598209 IGHV4OR15-8A0A075B7B6 117 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 A0A087WW49 117 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 ANKRD20A5PA0PJZ0 165 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 DPPA5A6NC42 116 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 DISC1C4P0D8 188 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 LINC01619G3V211 115 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 KRASP01116 189 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 PRH1P02810 166 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 HSPB1P04792 205 aaKnown RBP10.7□□□□□ -0.7
UPF1-205ENST00000598209 PIGPP57054 158 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 OR13C8Q8NGS7 320 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 ZFAND1Q8TCF1 268 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 MARCH1Q8TCQ1 289 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 USMG5Q96IX5 58 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 ZNF257Q9Y2Q1 563 aa10.7□□□□□ -0.7
UPF1-205ENST00000598209 CGB1A6NKQ9 187 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 NPIPB5A8MRT5 1133 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 RBMXL2O75526 392 aaKnown RBP10.69□□□□□ -0.7
UPF1-205ENST00000598209 FGF2P09038 288 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 AREGP15514 252 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 PTBP1P26599 531 aaKnown RBP eCLIP10.69□□□□□ -0.7
UPF1-205ENST00000598209 HOXD3P31249 432 aaPredicted RBP10.69□□□□□ -0.7
UPF1-205ENST00000598209 SLURP1P55000 103 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 OR2B8PP59922 312 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 RHOGP84095 191 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 ZNF45Q02386 682 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 PYDC2Q56P42 97 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 CADM3Q8N126 398 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 CCDC71LQ8N9Z2 235 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 DCUN1D4Q92564 292 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 MRGPRFQ96AM1 343 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 THAP7Q9BT49 309 aaPredicted RBP10.69□□□□□ -0.7
UPF1-205ENST00000598209 COMMD5Q9GZQ3 224 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 COPZ2Q9P299 210 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 V9GYH0 126 aa10.69□□□□□ -0.7
UPF1-205ENST00000598209 TRBV9A0A0B4J1U6 114 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 ANKRD34BA5PLL1 514 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 FAM223BA6NKX1 122 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 SEC14L6B5MCN3 397 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 H0Y980 276 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 SNAPC5O75971 98 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 IGKV1-39P01597 117 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 IGKV1D-39P04432 117 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 SERPINE2P07093 398 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 CTSDP07339 412 aaPredicted RBP10.68□□□□□ -0.7
UPF1-205ENST00000598209 ECI1P42126 302 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 ZNF79Q15937 498 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 C9orf66Q5T8R8 295 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 C19orf35Q6ZS72 473 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 REC114Q7Z4M0 266 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 CCDC190Q86UF4 302 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 FAM223AQ8IWN6 122 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 DLX4Q92988 240 aaPredicted RBP10.68□□□□□ -0.7
UPF1-205ENST00000598209 PRRT1Q99946 306 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 AKIP1Q9NQ31 210 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 AURKAIP1Q9NWT8 199 aaPredicted RBP10.68□□□□□ -0.7
UPF1-205ENST00000598209 NDUFA13Q9P0J0 144 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 NSG2Q9Y328 171 aa10.68□□□□□ -0.7
UPF1-205ENST00000598209 TEX50A0A1B0GTY4 177 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 OVOL1O14753 267 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 OR2J3O76001 311 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 REG1AP05451 166 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 CRYGCP07315 174 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 CTRB1P17538 263 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 PSMB6P28072 239 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 KRTAP10-11P60412 298 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 ATP5G2Q06055 141 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 EGFEM1PQ0D2K5 195 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 SURF2Q15527 256 aaPredicted RBP10.67□□□□□ -0.7
UPF1-205ENST00000598209 CTRB2Q6GPI1 263 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 ZNF343Q6P1L6 599 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 OR51S1Q8NGJ8 323 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 OR1L8Q8NGR8 309 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 TRIM63Q969Q1 353 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 SEC22AQ96IW7 307 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 TP53RKQ96S44 253 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 SRSF8Q9BRL6 282 aaKnown RBP10.67□□□□□ -0.7
UPF1-205ENST00000598209 QTRT1Q9BXR0 403 aaKnown RBP10.67□□□□□ -0.7
UPF1-205ENST00000598209 RANGRFQ9HD47 186 aaPredicted RBP10.67□□□□□ -0.7
UPF1-205ENST00000598209 SLC2A8Q9NY64 477 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 C14orf166Q9Y224 244 aaKnown RBP10.67□□□□□ -0.7
UPF1-205ENST00000598209 DNAH3Q8TD57 4116 aa10.67□□□□□ -0.7
UPF1-205ENST00000598209 C3orf85A0A1B0GTC6 90 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 IGLC7A0M8Q6 106 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 DHFRP00374 187 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 TRAPPC2P0DI81 140 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 TRAPPC2BP0DI82 140 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 EXOSC2Q13868 293 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms