RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 SMIM4Q8WVI0 70 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 AIFM2Q9BRQ8 373 aa12.1□□□□□ -0.47
LIG3-215ENST00000592690 NXF2Q9GZY0 626 aaKnown RBP12.1□□□□□ -0.47
LIG3-215ENST00000592690 RBM38Q9H0Z9 239 aaKnown RBP12.1□□□□□ -0.47
LIG3-215ENST00000592690 WI2-2373I1.2A0A1W2PRP0 233 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 MARCH11A6NNE9 402 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 OVOL1O14753 267 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 AREGP15514 252 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 PI3P19957 117 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 PPP5CP53041 499 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 MRPS10P82664 201 aaKnown RBP12.09□□□□□ -0.47
LIG3-215ENST00000592690 RHOGP84095 191 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 FAAP20Q6NZ36 180 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 LPCAT3Q6P1A2 487 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 AKIP1Q9NQ31 210 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 SLC2A9Q9NRM0 540 aa12.09□□□□□ -0.47
LIG3-215ENST00000592690 TRBV9A0A0B4J1U6 114 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 CTDSPLO15194 276 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 RAB3DO95716 219 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 KRASP01116 189 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 TRBV12-3P01733 135 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 PGAM2P15259 253 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 TNFSF8P32971 234 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 G6PCP35575 357 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 OR2B8PP59922 312 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 ERVK-16P61578 105 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 SSBP1Q04837 148 aaKnown RBP12.08□□□□□ -0.48
LIG3-215ENST00000592690 STEAP1BQ6NZ63 245 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 ZNF343Q6P1L6 599 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 USMG5Q96IX5 58 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 ZNF257Q9Y2Q1 563 aa12.08□□□□□ -0.48
LIG3-215ENST00000592690 DPPA5A6NC42 116 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 FAM223BA6NKX1 122 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 NPIPB5A8MRT5 1133 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 OR2J3O76001 311 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 REG1AP05451 166 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 S100GP29377 79 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 SCGB2B2Q4G0G5 96 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 SLC25A42Q86VD7 318 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 FAM223AQ8IWN6 122 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 MRGPRFQ96AM1 343 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 RANGRFQ9HD47 186 aaPredicted RBP12.07□□□□□ -0.48
LIG3-215ENST00000592690 RABL2AQ9UBK7 228 aaPredicted RBP12.07□□□□□ -0.48
LIG3-215ENST00000592690 RSL24D1Q9UHA3 163 aaKnown RBP12.07□□□□□ -0.48
LIG3-215ENST00000592690 RABL2BQ9UNT1 228 aa12.07□□□□□ -0.48
LIG3-215ENST00000592690 SORL1Q92673 2214 aa12.06□□□□□ -0.48
LIG3-215ENST00000592690 IGKV1-39P01597 117 aa12.06□□□□□ -0.48
LIG3-215ENST00000592690 IGKV1D-39P04432 117 aa12.06□□□□□ -0.48
LIG3-215ENST00000592690 CRYGCP07315 174 aa12.06□□□□□ -0.48
LIG3-215ENST00000592690 PSMB6P28072 239 aa12.06□□□□□ -0.48
LIG3-215ENST00000592690 EXOSC2Q13868 293 aaKnown RBP12.06□□□□□ -0.48
LIG3-215ENST00000592690 OR4C16Q8NGL9 310 aa12.06□□□□□ -0.48
LIG3-215ENST00000592690 SOSTQ9BQB4 213 aa12.06□□□□□ -0.48
LIG3-215ENST00000592690 COMMD5Q9GZQ3 224 aa12.06□□□□□ -0.48
LIG3-215ENST00000592690 FAM212BQ9NTI7 297 aaPredicted RBP12.06□□□□□ -0.48
LIG3-215ENST00000592690 PEF1Q9UBV8 284 aaKnown RBP12.06□□□□□ -0.48
LIG3-215ENST00000592690 NSG2Q9Y328 171 aa12.06□□□□□ -0.48
LIG3-215ENST00000592690 IGLC7A0M8Q6 106 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 GSTZ1O43708 216 aaPredicted RBP12.05□□□□□ -0.48
LIG3-215ENST00000592690 SAP30O75446 220 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 CTRB1P17538 263 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 PIGPP57054 158 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 RND3P61587 244 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 ATP5G2Q06055 141 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 C15orf32Q32M92 178 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 CTRB2Q6GPI1 263 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 ACSM6Q6P461 480 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 NECAP1Q8NC96 275 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 OR10W1Q8NGF6 305 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 OR13C8Q8NGS7 320 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 TERB2Q8NHR7 220 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 MARCH1Q8TCQ1 289 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 ZNF486Q96H40 463 aaPredicted RBP12.05□□□□□ -0.48
LIG3-215ENST00000592690 FANCD2OSQ96PS1 177 aa12.05□□□□□ -0.48
LIG3-215ENST00000592690 TEX50A0A1B0GTY4 177 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 FABP12A6NFH5 140 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 FGF2P09038 288 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 AKAIN1P0CW23 69 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 ZP3P21754 424 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 ECI1P42126 302 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 INSL3P51460 131 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 MEF2DQ14814 521 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 SEC22AQ96IW7 307 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 PRR25Q96S07 402 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 QTRT1Q9BXR0 403 aaKnown RBP12.04□□□□□ -0.48
LIG3-215ENST00000592690 S4R3C0 116 aa12.04□□□□□ -0.48
LIG3-215ENST00000592690 IGLV11-55A0A075B6I3 123 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 ANKRD20A5PA0PJZ0 165 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 DBX1A6NMT0 343 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 H0Y980 276 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 ZNF701M0R085 212 aaPredicted RBP12.03□□□□□ -0.48
LIG3-215ENST00000592690 NDUFB8O95169 186 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 PTBP1P26599 531 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIG3-215ENST00000592690 KLF5Q13887 457 aaPredicted RBP12.03□□□□□ -0.48
LIG3-215ENST00000592690 KLK9Q2XQG4 91 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 ZNF429Q86V71 674 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 CADM3Q8N126 398 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 OR1L8Q8NGR8 309 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 TP53RKQ96S44 253 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 FBXL7Q9UJT9 491 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms