RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 HRASLS2Q9NWW9 162 aa11.52□□□□□ -0.57
SHMT2-226ENST00000556825 HEBP2Q9Y5Z4 205 aa11.52□□□□□ -0.57
SHMT2-226ENST00000556825 KIAA1549Q9HCM3 1950 aa11.52□□□□□ -0.57
SHMT2-226ENST00000556825 LOC102723996A0A087X1L8 192 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 TRGV10A0A0A0MS01 117 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 FABP5P3A8MUU1 101 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 RER1O15258 196 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 CISD3P0C7P0 127 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 CCL1P22362 96 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 NTF4P34130 210 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 XGP55808 180 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 OR8B8Q15620 311 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 SGCBQ16585 318 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 POM121L1PQ3SYA9 428 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 ZDHHC23Q8IYP9 409 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 GAPTQ8N292 157 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 LRRC29Q8WV35 223 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 PTH2Q96A98 100 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 MAP1LC3CQ9BXW4 147 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 PPDPFQ9H3Y8 114 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 OSTCQ9NRP0 149 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 A0A0C4DFX4 3053 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 SMIM27A0A1W2PRY6 76 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 IZUMO1RA6ND01 250 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 K7ESM1 405 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 IGHG1P01857 330 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 IGHMP01871 453 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 OR1D4P47884 311 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 DAP3P51398 398 aaKnown RBP11.51□□□□□ -0.57
SHMT2-226ENST00000556825 GAB4Q2WGN9 574 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 ALKBH6Q3KRA9 238 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 OR9G4Q8NGQ1 327 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 TMEM147Q9BVK8 224 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 IL23AQ9NPF7 189 aa11.51□□□□□ -0.57
SHMT2-226ENST00000556825 A1L4Q6 167 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 NPIPB5A8MRT5 1133 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 FCGR2AP12318 317 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 CD38P28907 300 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 PLP2Q04941 152 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 ZNF146Q15072 292 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 TIGITQ495A1 244 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 ZFAND6Q6FIF0 208 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 ZNF645Q8N7E2 425 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 TEX45Q8NA69 505 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 OSR1Q8TAX0 266 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-226ENST00000556825 GPHA2Q96T91 129 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-226ENST00000556825 SCN3AQ9NY46 2000 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 IGHV1-24A0A0C4DH33 117 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 SH2D7A6NKC9 451 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-226ENST00000556825 EML2O95834 649 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 IGHG4P01861 327 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 THBDP07204 575 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 OR5AL1P0C617 328 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 PRTN3P24158 256 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 RPL8P62917 257 aaKnown RBP11.5□□□□□ -0.57
SHMT2-226ENST00000556825 SPATA46Q5T0L3 261 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 TMEM215Q68D42 235 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 TMEM14EPQ6UXP3 125 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 Q6ZRM9 215 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 CHCHD1Q96BP2 118 aaKnown RBP11.5□□□□□ -0.57
SHMT2-226ENST00000556825 KCNK17Q96T54 332 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 SPANXA1Q9NS26 97 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 OR1A1Q9P1Q5 309 aa11.5□□□□□ -0.57
SHMT2-226ENST00000556825 ARHGAP21Q5T5U3 1957 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 TRAV36DV7A0A075B6V5 113 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 B3GALT2O43825 422 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 OR2J3O76001 311 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 LINC01545Q5VT33 79 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-226ENST00000556825 FAM131CQ96AQ9 280 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 TIMM29Q9BSF4 260 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 COL25A1Q9BXS0 654 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-226ENST00000556825 NPCDR1Q9BY65 106 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 TMEM74BQ9NUR3 256 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 C19orf25Q9UFG5 118 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-226ENST00000556825 ATG2BQ96BY7 2078 aa11.49□□□□□ -0.57
SHMT2-226ENST00000556825 A0A1W2PQM1 296 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 DEFA4P12838 97 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 KIR2DS4P43632 304 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 RPL31P62899 125 aaKnown RBP11.48□□□□□ -0.57
SHMT2-226ENST00000556825 FUT7Q11130 342 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 VWC2Q2TAL6 325 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 Q6AWC8 147 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 SSX8Q7RTT4 187 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 C11orf52Q96A22 123 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 TMEM133Q9H2Q1 129 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 CACNG5Q9UF02 275 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 CSDC2Q9Y534 153 aaKnown RBP11.48□□□□□ -0.57
SHMT2-226ENST00000556825 MPC1Q9Y5U8 109 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 PDE4DIPQ5VU43 2346 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 ALPK2Q86TB3 2170 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 FAM90A27PA6NNH2 459 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 ZNF121P58317 390 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-226ENST00000556825 DEFB134Q4QY38 66 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 LYSMD4Q5XG99 296 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 HLA-DQA1Q5Y7H0 255 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 VN1R4Q7Z5H5 301 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 TEX29Q8N6K0 151 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 GATSQ8NAP1 163 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms