RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 SPANXA1Q9NS26 97 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 BEX4Q9NWD9 120 aaPredicted RBP4.29□□□□□ -1.72
TMEM260-210ENST00000556422 VAX2Q9UIW0 290 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 CHD8Q9HCK8 2581 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 A0A096LPE4 126 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 A0A1W2PPZ6 126 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 MBD3L4A6NDZ8 208 aaPredicted RBP4.29□□□□□ -1.72
TMEM260-210ENST00000556422 MBD3L3A6NE82 208 aaPredicted RBP4.29□□□□□ -1.72
TMEM260-210ENST00000556422 MBD3L5A6NJ08 208 aaPredicted RBP4.29□□□□□ -1.72
TMEM260-210ENST00000556422 FAM90A27PA6NNH2 459 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 H7BYZ3 331 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 SPINK8P0C7L1 97 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 FTH1P19P0C7X4 201 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 REG1BP48304 166 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 MTCP1P56278 107 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 ERVK11-1P61568 191 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 SUPT4H1P63272 117 aaKnown RBP4.29□□□□□ -1.72
TMEM260-210ENST00000556422 FOXL1Q12952 345 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 IL22RA1Q8N6P7 574 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 EIF5A2Q9GZV4 153 aaKnown RBP4.29□□□□□ -1.72
TMEM260-210ENST00000556422 PRDM14Q9GZV8 571 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 INSIG2Q9Y5U4 225 aa4.29□□□□□ -1.72
TMEM260-210ENST00000556422 A0A0G2JLM5 398 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 KALRNO60229 2985 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SMIM17P0DL12 118 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 WT1P19544 449 aaPredicted RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SULT1A2P50226 295 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SRPXP78539 464 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 ADIRFQ15847 76 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 TIMM23BQ5SRD1 257 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 OR10V1Q8NGI7 309 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 OCC1Q8TAD7 63 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 RTBDNQ9BSG5 229 aaPredicted RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 CABLES2Q9BTV7 478 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 LIME1Q9H400 295 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SPRR3Q9UBC9 169 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 ANXA10Q9UJ72 324 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 OSGIN2Q9Y236 505 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 RELNP78509 3460 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 GTF3C1Q12789 2109 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 UMAD1C9J7I0 102 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SDCBPO00560 298 aaPredicted RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 WISP2O76076 250 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 PGA5P0DJD9 388 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 CD34P28906 385 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 MPGP29372 298 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 RPL12P30050 165 aaKnown RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 FUT6P51993 359 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 PCBD1P61457 104 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 RHOGP84095 191 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 RELBQ01201 579 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 C10orf91Q5T1B1 145 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 FBXW12Q6X9E4 464 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 STHQ8IWL8 128 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SCCPDHQ8NBX0 429 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 WDR13Q9H1Z4 485 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 CYSLTR1Q9Y271 337 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 KLF13Q9Y2Y9 288 aaPredicted RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 NOP16Q9Y3C1 178 aaKnown RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 WIPI2Q9Y4P8 454 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 NCOR2Q9Y618 2525 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 A0A0B4J2A0 478 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 DUS4LO95620 317 aaKnown RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 NRASP01111 189 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 PI3P19957 117 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 NBL1P41271 181 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SRSF3P84103 164 aaKnown RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 ARFRP1Q13795 201 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 ATXN7L3Q14CW9 347 aaPredicted RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 PIGYQ3MUY2 71 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 ANXA2RQ3ZCQ2 193 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 RASL11AQ6T310 242 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 POC1AQ8NBT0 407 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 DEFB124Q8NES8 71 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 OR5AP2Q8NGF4 316 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 OR5AN1Q8NGI8 311 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 KIR2DL5BQ8NHK3 375 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 NEU4Q8WWR8 484 aaPredicted RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 FRZBQ92765 325 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 TMEM204Q9BSN7 226 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 Q9N2K0 584 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 PRR13Q9NZ81 148 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SLC25A10Q9UBX3 287 aaPredicted RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SHPKQ9UHJ6 478 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 METRNQ9UJH8 293 aa4.28□□□□□ -1.72
TMEM260-210ENST00000556422 SOX21Q9Y651 276 aaPredicted RBP4.28□□□□□ -1.72
TMEM260-210ENST00000556422 RNF222A6NCQ9 220 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 M0R1X1 148 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 KNG1P01042 644 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 TMEM225BP0DP42 221 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 CD99P14209 185 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 SRP14P37108 136 aaKnown RBP4.27□□□□□ -1.73
TMEM260-210ENST00000556422 LGALS4P56470 323 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 PLGLB1Q02325 96 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 MORN2Q502X0 79 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 LYRM7Q5U5X0 104 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 PPP1R1CQ8WVI7 109 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 WDYHV1Q96HA8 205 aa4.27□□□□□ -1.73
TMEM260-210ENST00000556422 SEC22AQ96IW7 307 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms