RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 FUT9Q9Y231 359 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 RBM7Q9Y580 266 aaKnown RBP2.35□□□□□ -2.03
SCFD1-209ENST00000553280 NUP155O75694 1391 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 CCDC144AA2RUR9 1427 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 PIK3C2GO75747 1445 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 A0A0J9YW62 118 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 FAAHO00519 579 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 CNIH1O95406 144 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 ALDH3A1P30838 453 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 CAPZBP47756 277 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 RUNX1Q01196 453 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 CDK10Q15131 360 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 TMED2Q15363 201 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 PABPC1L2AQ5JQF8 200 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 DNAJC30Q96LL9 226 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 TSPAN32Q96QS1 320 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 PAIP2Q9BPZ3 127 aaKnown RBP2.34□□□□□ -2.03
SCFD1-209ENST00000553280 CMSS1Q9BQ75 279 aaKnown RBP2.34□□□□□ -2.03
SCFD1-209ENST00000553280 ULBP3Q9BZM4 244 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 EFCAB1Q9HAE3 211 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 CISHQ9NSE2 258 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 DOK5Q9P104 306 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 PRELID3BQ9Y3B1 194 aa2.34□□□□□ -2.03
SCFD1-209ENST00000553280 ATG2BQ96BY7 2078 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 TRAV26-2A0A0B4J265 109 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 FAM236DA0A1B0GTK5 79 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 OR4C46A6NHA9 309 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 LEPROTO15243 131 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 FAM236CP0DP71 79 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 CCL5P13501 91 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 ZNF90Q03938 601 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 KCNJ8Q15842 424 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 ZNF181Q2M3W8 571 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 SLC35E3Q7Z769 313 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 OR6V1Q8N148 313 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 OR5J2Q8NH18 312 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 MRPS24Q96EL2 167 aaKnown RBP2.33□□□□□ -2.04
SCFD1-209ENST00000553280 CCDC94Q9BW85 323 aaPredicted RBP2.33□□□□□ -2.04
SCFD1-209ENST00000553280 IL20Q9NYY1 176 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 IDI2-AS1Q9NZ38 188 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 ARL2BPQ9Y2Y0 163 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 PLXNB1O43157 2135 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 ZNF407Q9C0G0 2248 aa2.33□□□□□ -2.04
SCFD1-209ENST00000553280 PCF11O94913 1555 aaKnown RBP2.32□□□□□ -2.04
SCFD1-209ENST00000553280 FNDC10F2Z333 226 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 J3QRE1 110 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 NOS1APO75052 506 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-209ENST00000553280 C1QAP02745 245 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 CSRP1P21291 193 aaKnown RBP2.32□□□□□ -2.04
SCFD1-209ENST00000553280 PSMB8P28062 276 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 IAH1Q2TAA2 248 aaPredicted RBP2.32□□□□□ -2.04
SCFD1-209ENST00000553280 ANKRD29Q8N6D5 301 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 CDC26Q8NHZ8 85 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 DGCR14Q96DF8 476 aaKnown RBP2.32□□□□□ -2.04
SCFD1-209ENST00000553280 IMMP2LQ96T52 175 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 COMMD5Q9GZQ3 224 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 CXCL16Q9H2A7 254 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 FBXL12Q9NXK8 326 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 IL36BQ9NZH7 164 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 HHLA3Q9XRX5 114 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 HECW2Q9P2P5 1572 aa2.32□□□□□ -2.04
SCFD1-209ENST00000553280 LTBP2Q14767 1821 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 TRGV4A0A0C4DH28 118 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 KLRC4O43908 158 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 SERPINA1P01009 418 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 TFPTP0C1Z6 253 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 HINT1P49773 126 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-209ENST00000553280 EMP1P54849 157 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 TPI1P60174 286 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 RPS20P60866 119 aaKnown RBP2.31□□□□□ -2.04
SCFD1-209ENST00000553280 ARF6P62330 175 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 CCL20P78556 96 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 LYZL1Q6UWQ5 148 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 DYNAPQ8N1N2 210 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 OR51T1Q8NGJ9 327 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 TMEM147Q9BVK8 224 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 NDUFB11Q9NX14 153 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 PRO2289Q9P1D8 64 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 TMEM56-RWDD3S4R434 201 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 KDM5BQ9UGL1 1544 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 SIPA1L1O43166 1804 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 MYO16Q9Y6X6 1858 aa2.31□□□□□ -2.04
SCFD1-209ENST00000553280 LY6LH3BQJ8 138 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 CREBL2O60519 120 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-209ENST00000553280 PRM2P04554 102 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 SERPINA7P05543 415 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 LGALS1P09382 135 aaKnown RBP2.3□□□□□ -2.04
SCFD1-209ENST00000553280 HLA-DMBP28068 263 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 CCR2P41597 374 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 HIST1H4AP62805 103 aaKnown RBP2.3□□□□□ -2.04
SCFD1-209ENST00000553280 LIN52Q52LA3 116 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 ZNF676Q8N7Q3 588 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 SIGMAR1Q99720 223 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 NIPSNAP1Q9BPW8 284 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 OR8D2Q9GZM6 311 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 ROBO3Q96MS0 1386 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 ADAMTS7Q9UKP4 1686 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 ITGB4P16144 1822 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 TRPM6Q9BX84 2022 aa2.3□□□□□ -2.04
SCFD1-209ENST00000553280 SLX4Q8IY92 1834 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms