RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 RPUSD4Q96CM3 377 aaKnown RBP6.74□□□□□ -1.33
HDAC6-234ENST00000493923 CIB3Q96Q77 187 aaPredicted RBP6.74□□□□□ -1.33
HDAC6-234ENST00000493923 IL19Q9UHD0 177 aa6.74□□□□□ -1.33
HDAC6-234ENST00000493923 PPP1R3CQ9UQK1 317 aa6.74□□□□□ -1.33
HDAC6-234ENST00000493923 MRPS16Q9Y3D3 137 aaKnown RBP6.74□□□□□ -1.33
HDAC6-234ENST00000493923 LSM5Q9Y4Y9 91 aaKnown RBP6.74□□□□□ -1.33
HDAC6-234ENST00000493923 INSIG2Q9Y5U4 225 aa6.74□□□□□ -1.33
HDAC6-234ENST00000493923 PRKDCP78527 4128 aaKnown RBP6.73□□□□□ -1.33
HDAC6-234ENST00000493923 IQCF6A8MYZ5 107 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 F5H5K5 113 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 CCL25O15444 150 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 ST8SIA3O43173 380 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 CTSDP07339 412 aaPredicted RBP6.73□□□□□ -1.33
HDAC6-234ENST00000493923 NBEAP1P0C6P0 100 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 ESDP10768 282 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 TNFSF4P23510 183 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 DUSP1P28562 367 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 MDH2P40926 338 aaKnown RBP6.73□□□□□ -1.33
HDAC6-234ENST00000493923 GALR1P47211 349 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 HNRNPA3P51991 378 aaKnown RBP6.73□□□□□ -1.33
HDAC6-234ENST00000493923 ELLP55199 621 aaPredicted RBP6.73□□□□□ -1.33
HDAC6-234ENST00000493923 SRPXP78539 464 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 PAX8Q06710 450 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 BATFQ16520 125 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 SNAI3Q3KNW1 292 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 TMEM155Q4W5P6 130 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 GLYATL3Q5SZD4 288 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 LINC01590Q5TEZ4 76 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 CYP2G1PQ6ZSU1 146 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 C1orf174Q8IYL3 243 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 FGFRL1Q8N441 504 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 LRTM2Q8N967 370 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 OR2T10Q8NGZ9 312 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 OR2AE1Q8NHA4 323 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 OR8B4Q96RC9 309 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 RNF2Q99496 336 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 NKX3-1Q99801 234 aaPredicted RBP6.73□□□□□ -1.33
HDAC6-234ENST00000493923 SPIN2AQ99865 258 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 RARRES2Q99969 163 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 SPIN2BQ9BPZ2 258 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 ELOVL1Q9BW60 279 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 SMIM3Q9BZL3 60 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 OR51I2Q9H344 312 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 OR6C3Q9NZP0 311 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 MRPL27Q9P0M9 148 aaKnown RBP6.73□□□□□ -1.33
HDAC6-234ENST00000493923 CGGBP1Q9UFW8 167 aaPredicted RBP6.73□□□□□ -1.33
HDAC6-234ENST00000493923 HHLA2Q9UM44 414 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 POLR1DQ9Y2S0 133 aa6.73□□□□□ -1.33
HDAC6-234ENST00000493923 RBM7Q9Y580 266 aaKnown RBP6.73□□□□□ -1.33
HDAC6-234ENST00000493923 TRAV9-1A0A075B6T8 112 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 PPIAL4EA0A075B759 164 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 PPIAL4CA0A0B4J2A2 164 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 DNAJC9-AS1A6NH13 148 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 C22orf46C9J442 243 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 PPIAL4DF5H284 164 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 FOXH1O75593 365 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 ISG15P05161 165 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 CTXN2P0C2S0 81 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 PPIAL4FP0DN26 164 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 BCL2P10415 239 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 AMY2BP19961 511 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 ALOX5APP20292 161 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 SUPT4H1P63272 117 aaKnown RBP6.72□□□□□ -1.33
HDAC6-234ENST00000493923 ZNF92Q03936 586 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 PSG3Q16557 428 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 PRSS8Q16651 343 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 OCIAD2Q56VL3 154 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 WDR38Q5JTN6 314 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 FAM90A2PQ658T7 463 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 DNM1P34Q6PK57 102 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 ZNF841Q6ZN19 808 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 DOK3Q7L591 496 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 TCTEX1D1Q8N7M0 179 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 GJC3Q8NFK1 279 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 CMTM2Q8TAZ6 248 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 APOBEC3DQ96AK3 386 aaPredicted RBP6.72□□□□□ -1.33
HDAC6-234ENST00000493923 RTBDNQ9BSG5 229 aaPredicted RBP6.72□□□□□ -1.33
HDAC6-234ENST00000493923 ABHD6Q9BV23 337 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 MOB1AQ9H8S9 216 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 SLC35D1Q9NTN3 355 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 CTSZQ9UBR2 303 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 LAMTOR2Q9Y2Q5 125 aa6.72□□□□□ -1.33
HDAC6-234ENST00000493923 CDIPTO14735 213 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 TNFRSF13BO14836 293 aaPredicted RBP6.71□□□□□ -1.34
HDAC6-234ENST00000493923 TNFRSF1AP19438 455 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 TUBG1P23258 451 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 CA6P23280 308 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 SUMO1P63165 101 aaKnown RBP6.71□□□□□ -1.34
HDAC6-234ENST00000493923 RHOGP84095 191 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 ROM1Q03395 351 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 PRR27Q6MZM9 219 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 DUX4L9Q6RFH8 374 aaPredicted RBP6.71□□□□□ -1.34
HDAC6-234ENST00000493923 ZNF826PQ6ZT77 177 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 CMTM1Q8IZ96 169 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 LYG1Q8N1E2 194 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 OR51G1Q8NGK1 321 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 OR4D5Q8NGN0 318 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 OR13G1Q8NGZ3 307 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 TOMM40LQ969M1 308 aa6.71□□□□□ -1.34
HDAC6-234ENST00000493923 ERGIC1Q969X5 290 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms