RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 DEFB136Q30KP8 78 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 OXLD1Q5BKU9 147 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 C19orf54Q5BKX5 351 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 SSX9Q7RTT3 188 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 SLC25A42Q86VD7 318 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 OR5T1Q8NG75 326 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 OR11H1Q8NG94 326 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 TMEM167AQ8TBQ9 72 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 MYOZ3Q8TDC0 251 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 RAX2Q96IS3 184 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 MS4A10Q96PG2 267 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 C7orf50Q9BRJ6 194 aaKnown RBP12.76□□□□□ -0.37
SF3A1-204ENST00000447376 CCDC32Q9BV29 185 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 COA4Q9NYJ1 87 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 BET1LQ9NYM9 111 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 ZMAT5Q9UDW3 170 aaKnown RBP12.76□□□□□ -0.37
SF3A1-204ENST00000447376 GPR132Q9UNW8 380 aa12.76□□□□□ -0.37
SF3A1-204ENST00000447376 TEX13DA0A0J9YY54 714 aaPredicted RBP12.75□□□□□ -0.37
SF3A1-204ENST00000447376 C3orf85A0A1B0GTC6 90 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 H0Y980 276 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 ATG12O94817 140 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 RUNX1Q01196 453 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 ZNF616Q08AN1 781 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 OR4A47Q6IF82 309 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 ETV3LQ6ZN32 361 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 PUSL1Q8N0Z8 303 aaKnown RBP12.75□□□□□ -0.37
SF3A1-204ENST00000447376 MRGPRFQ96AM1 343 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 DUX3Q96PT4 197 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 OR5B12Q96R08 314 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 P2RX4Q99571 388 aa12.75□□□□□ -0.37
SF3A1-204ENST00000447376 SLC25A21Q9BQT8 299 aaPredicted RBP12.75□□□□□ -0.37
SF3A1-204ENST00000447376 WDR12Q9GZL7 423 aaKnown RBP12.75□□□□□ -0.37
SF3A1-204ENST00000447376 MARCH11A6NNE9 402 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 SOX15O60248 233 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 KRASP01116 189 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 LGALS1P09382 135 aaKnown RBP12.74□□□□□ -0.37
SF3A1-204ENST00000447376 RPL27AP46776 148 aaKnown RBP12.74□□□□□ -0.37
SF3A1-204ENST00000447376 RPL8P62917 257 aaKnown RBP12.74□□□□□ -0.37
SF3A1-204ENST00000447376 ZNF846Q147U1 533 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 ZNF585BQ52M93 769 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 SGPP2Q8IWX5 399 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 CADM3Q8N126 398 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 OR1N2Q8NGR9 330 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 CASTOR1Q8WTX7 329 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 SDHCQ99643 169 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-204ENST00000447376 RTBDNQ9BSG5 229 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-204ENST00000447376 C5orf66Q9H5L9 145 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 KCNIP3Q9Y2W7 256 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 PLXNB1O43157 2135 aa12.74□□□□□ -0.37
SF3A1-204ENST00000447376 LINC00854A0A1B0GVQ3 168 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 I3L521 148 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 SNAPC5O75971 98 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 DHFRP00374 187 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 OR9G9P0C7N8 305 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 BEAN1Q3B7T3 259 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 REC114Q7Z4M0 266 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 FYTTD1Q96QD9 318 aaKnown RBP12.73□□□□□ -0.37
SF3A1-204ENST00000447376 TSC22D3Q99576 134 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 COMMD5Q9GZQ3 224 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 NAA60Q9H7X0 242 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 GNB4Q9HAV0 340 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 TMEM140Q9NV12 185 aa12.73□□□□□ -0.37
SF3A1-204ENST00000447376 LINC01619G3V211 115 aa12.72□□□□□ -0.37
SF3A1-204ENST00000447376 UPK2O00526 184 aa12.72□□□□□ -0.37
SF3A1-204ENST00000447376 FGF2P09038 288 aa12.72□□□□□ -0.37
SF3A1-204ENST00000447376 APELAP0DMC3 54 aa12.72□□□□□ -0.37
SF3A1-204ENST00000447376 HLA-GP17693 338 aa12.72□□□□□ -0.37
SF3A1-204ENST00000447376 G6PCP35575 357 aa12.72□□□□□ -0.37
SF3A1-204ENST00000447376 SSBP2P81877 361 aaPredicted RBP12.72□□□□□ -0.37
SF3A1-204ENST00000447376 DHODHQ02127 395 aa12.72□□□□□ -0.37
SF3A1-204ENST00000447376 RBMS2Q15434 407 aaKnown RBP12.72□□□□□ -0.37
SF3A1-204ENST00000447376 TRIM16LQ309B1 348 aa12.72□□□□□ -0.37
SF3A1-204ENST00000447376 USMG5Q96IX5 58 aa12.72□□□□□ -0.37
SF3A1-204ENST00000447376 PIGBOS1A0A0B4J2F0 54 aa12.71□□□□□ -0.37
SF3A1-204ENST00000447376 CRYM-AS1A6NIL9 109 aa12.71□□□□□ -0.37
SF3A1-204ENST00000447376 BRI3O95415 125 aa12.71□□□□□ -0.37
SF3A1-204ENST00000447376 IGHV3-11P01762 117 aa12.71□□□□□ -0.37
SF3A1-204ENST00000447376 ANXA3P12429 323 aa12.71□□□□□ -0.37
SF3A1-204ENST00000447376 KIAA0141Q14154 515 aaPredicted RBP12.71□□□□□ -0.37
SF3A1-204ENST00000447376 KPRPQ5T749 579 aaPredicted RBP12.71□□□□□ -0.37
SF3A1-204ENST00000447376 H2BFWTQ7Z2G1 175 aa12.71□□□□□ -0.37
SF3A1-204ENST00000447376 TP53RKQ96S44 253 aa12.71□□□□□ -0.37
SF3A1-204ENST00000447376 TMEM222Q9H0R3 208 aa12.71□□□□□ -0.37
SF3A1-204ENST00000447376 FKBP11Q9NYL4 201 aa12.71□□□□□ -0.37
SF3A1-204ENST00000447376 MEGF8Q7Z7M0 2845 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 CYB5BO43169 146 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 HSPB1P04792 205 aaKnown RBP12.7□□□□□ -0.38
SF3A1-204ENST00000447376 OR5AC1P0C628 307 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 AKR1C4P17516 323 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 UCP1P25874 307 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 AKR1C2P52895 323 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 FHL3Q13643 280 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 MRGPRG-AS1Q2M3A8 158 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 SP6Q3SY56 376 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 C9orf66Q5T8R8 295 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 TMED4Q7Z7H5 227 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 RNASE11Q8TAA1 199 aaKnown RBP12.7□□□□□ -0.38
SF3A1-204ENST00000447376 RRNAD1Q96FB5 475 aaKnown RBP12.7□□□□□ -0.38
SF3A1-204ENST00000447376 PRNDQ9UKY0 176 aa12.7□□□□□ -0.38
SF3A1-204ENST00000447376 ZNF257Q9Y2Q1 563 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms