RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 HNRNPA3P51991 378 aaKnown RBP9.3□□□□□ -0.92
CUX1-204ENST00000393824 PSG4Q00888 419 aa9.3□□□□□ -0.92
CUX1-204ENST00000393824 FFAR4Q5NUL3 377 aa9.3□□□□□ -0.92
CUX1-204ENST00000393824 C9orf135Q5VTT2 229 aa9.3□□□□□ -0.92
CUX1-204ENST00000393824 AAED1Q7RTV5 226 aa9.3□□□□□ -0.92
CUX1-204ENST00000393824 MYPOPQ86VE0 399 aaPredicted RBP9.3□□□□□ -0.92
CUX1-204ENST00000393824 TXN2Q99757 166 aa9.3□□□□□ -0.92
CUX1-204ENST00000393824 C1QTNF5Q9BXJ0 243 aa9.3□□□□□ -0.92
CUX1-204ENST00000393824 PRRG4Q9BZD6 226 aa9.3□□□□□ -0.92
CUX1-204ENST00000393824 KCNIP2Q9NS61 270 aa9.3□□□□□ -0.92
CUX1-204ENST00000393824 RNF114Q9Y508 228 aa9.3□□□□□ -0.92
CUX1-204ENST00000393824 FLNCQ14315 2725 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 SAA2-SAA4A0A096LPE2 208 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 IGHV2OR16-5A0A0B4J2B6 119 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 MDFIC2A0A1B0GVS7 189 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 NDUFB4O95168 129 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 CBLN1P23435 193 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 Q6ZN92 141 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 KLHDC1Q8N7A1 406 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 ZNF114Q8NC26 417 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 STARD4Q96DR4 205 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 SMIM12Q96EX1 92 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 TMEM147Q9BVK8 224 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 IL19Q9UHD0 177 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 RNF24Q9Y225 148 aa9.29□□□□□ -0.92
CUX1-204ENST00000393824 RBM7Q9Y580 266 aaKnown RBP9.29□□□□□ -0.92
CUX1-204ENST00000393824 REG1AP05451 166 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 TIMP3P35625 211 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 PRSS12P56730 875 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 NRN1LQ496H8 165 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 FBLN7Q53RD9 439 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 OCIAD2Q56VL3 154 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 APH1AQ96BI3 265 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 SARAFQ96BY9 339 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 TXNDC17Q9BRA2 123 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 TRBV9A0A0B4J1U6 114 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 AHRRA9YTQ3 701 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 ZNF253O75346 499 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 PATE4P0C8F1 98 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 KRTDAPP60985 99 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 VWA1Q6PCB0 445 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 COLCA1Q6ZS62 124 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 MKXQ8IYA7 352 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 ZDHHC23Q8IYP9 409 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 OR10G8Q8NGN5 311 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 OR1K1Q8NGR3 316 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 DERL1Q9BUN8 251 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 BET1LQ9NYM9 111 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 IL36BQ9NZH7 164 aa9.28□□□□□ -0.92
CUX1-204ENST00000393824 TRBV20OR9-2A0A075B6H5 130 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 PMS2P5A8MQ11 134 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 NPIPB11E5RHQ5 1161 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 J3QW42 95 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 MRPL33O75394 65 aaKnown RBP9.27□□□□□ -0.92
CUX1-204ENST00000393824 IGLV2-14P01704 120 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 B4GALT1P15291 398 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 EGR1P18146 543 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 BMP5P22003 454 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 GUSBP1Q15486 140 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 ZNF585BQ52M93 769 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 FGFBP3Q8TAT2 258 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 RAB1CQ92928 201 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 FOXB1Q99853 325 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 NRN1Q9NPD7 142 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 ERRFI1Q9UJM3 462 aaPredicted RBP9.27□□□□□ -0.92
CUX1-204ENST00000393824 CDC42EP3Q9UKI2 254 aa9.27□□□□□ -0.92
CUX1-204ENST00000393824 ZNF503-AS2A6NEH8 195 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 F2Z2F3 143 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 SH2D1BO14796 132 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 BCL3P20749 454 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 KIR2DL2P43627 348 aaPredicted RBP9.27□□□□□ -0.93
CUX1-204ENST00000393824 PRRX1P54821 245 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 RPS20P60866 119 aaKnown RBP9.27□□□□□ -0.93
CUX1-204ENST00000393824 ZNF90Q03938 601 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 VWC2Q2TAL6 325 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 CEACAM16Q2WEN9 425 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 TCTEX1D1Q8N7M0 179 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 RDH5Q92781 318 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 NPCDR1Q9BY65 106 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 CST9LQ9H4G1 147 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 SLC35D1Q9NTN3 355 aa9.27□□□□□ -0.93
CUX1-204ENST00000393824 TBL2Q9Y4P3 447 aaKnown RBP9.27□□□□□ -0.93
CUX1-204ENST00000393824 DOCK11Q5JSL3 2073 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 TRAV30A0A087WSZ9 112 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 TMEM8BA6NDV4 472 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 PGPEP1LA6NFU8 196 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 CRYAAP02489 173 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 TSPOP30536 169 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 ATP5G3P48201 142 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 KRTCAP3Q53RY4 240 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 OR10J3Q5JRS4 329 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 UNQ5815/PRO19632Q6UWF5 114 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 PNKDQ8N490 385 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 OR5B3Q8NH48 314 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 TMEM45BQ96B21 275 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 QTRT1Q9BXR0 403 aaKnown RBP9.26□□□□□ -0.93
CUX1-204ENST00000393824 GNB1LQ9BYB4 327 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 ARHGAP21Q5T5U3 1957 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 ZNF462Q96JM2 2506 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 HIVEP3Q5T1R4 2406 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms