RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SPATA31B1PQ5VZV4 182 aa13.07□□□□□ -0.32
LDLR-204ENST00000545707 VHLLQ6RSH7 139 aa13.07□□□□□ -0.32
LDLR-204ENST00000545707 DIRC2Q96SL1 478 aa13.07□□□□□ -0.32
LDLR-204ENST00000545707 PXMP4Q9Y6I8 212 aa13.07□□□□□ -0.32
LDLR-204ENST00000545707 ZNF891A8MT65 544 aaPredicted RBP13.06□□□□□ -0.32
LDLR-204ENST00000545707 DVL1O14640 695 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 GFRA3O60609 400 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 VENTXO95231 258 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 VDAC2P45880 294 aaPredicted RBP13.06□□□□□ -0.32
LDLR-204ENST00000545707 RELBQ01201 579 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 TCF23Q7RTU1 214 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 FAM90A1Q86YD7 464 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 ZNF664Q8N3J9 261 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 GCSAMQ8N6F7 178 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 C1orf159Q96HA4 380 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 TMEM140Q9NV12 185 aa13.06□□□□□ -0.32
LDLR-204ENST00000545707 MAP1BP46821 2468 aaKnown RBP13.06□□□□□ -0.32
LDLR-204ENST00000545707 SCO2A0A1W2PP80 73 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 THBS3P49746 956 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 ZNF83P51522 516 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 LOXL3P58215 753 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 DUX4L9Q6RFH8 374 aaPredicted RBP13.05□□□□□ -0.32
LDLR-204ENST00000545707 OR5R1Q8NH85 324 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 GGTLC1Q9BX51 225 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 IFI27L2Q9H2X8 130 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 M0R296 226 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 PDE6DO43924 150 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 SRP14P37108 136 aaKnown RBP13.05□□□□□ -0.32
LDLR-204ENST00000545707 COA6Q5JTJ3 125 aaKnown RBP13.05□□□□□ -0.32
LDLR-204ENST00000545707 MOGAT3Q86VF5 341 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 S1PR3Q99500 378 aa13.05□□□□□ -0.32
LDLR-204ENST00000545707 TET2Q6N021 2002 aaPredicted RBP13.05□□□□□ -0.32
LDLR-204ENST00000545707 SRRM5B3KS81 715 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 PRSS46E5RG02 174 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 FOXH1O75593 365 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 ERVK-16P61578 105 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 KCNIP4Q6PIL6 250 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 REC114Q7Z4M0 266 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 RNASEH2CQ8TDP1 164 aaKnown RBP13.04□□□□□ -0.32
LDLR-204ENST00000545707 OR2V2Q96R30 315 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 HINT2Q9BX68 163 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 SEPSECSQ9HD40 501 aaKnown RBP13.04□□□□□ -0.32
LDLR-204ENST00000545707 TCF19Q9Y242 345 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 DCHS1Q96JQ0 3298 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 SPRY3O43610 288 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 NUPR1O60356 82 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 TNFSF13O75888 250 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 IGLV1-44P01699 117 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 RNF224P0DH78 156 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 MBNL2Q5VZF2 373 aaKnown RBP13.04□□□□□ -0.32
LDLR-204ENST00000545707 TMEM256Q8N2U0 113 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 CISD2Q8N5K1 135 aaKnown RBP13.04□□□□□ -0.32
LDLR-204ENST00000545707 SGMS2Q8NHU3 365 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 STARD4Q96DR4 205 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 FAM122AQ96E09 287 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 ZNF71Q9NQZ8 489 aaPredicted RBP13.04□□□□□ -0.32
LDLR-204ENST00000545707 KCNIP2Q9NS61 270 aa13.04□□□□□ -0.32
LDLR-204ENST00000545707 YTHDF2Q9Y5A9 579 aaKnown RBP13.04□□□□□ -0.32
LDLR-204ENST00000545707 OPRK1P41145 380 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 TRIP6Q15654 476 aaKnown RBP13.03□□□□□ -0.32
LDLR-204ENST00000545707 ACY3Q96HD9 319 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 DKK4Q9UBT3 224 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 JPT1Q9UK76 154 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 TRAPPC1Q9Y5R8 145 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 CACNA1HO95180 2353 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 CNOT1A5YKK6 2376 aaKnown RBP13.03□□□□□ -0.32
LDLR-204ENST00000545707 PRR33A8MZF0 331 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 MGST3O14880 152 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 YPEL1O60688 119 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 TYMSP04818 313 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 SNRPCP09234 159 aaKnown RBP13.03□□□□□ -0.32
LDLR-204ENST00000545707 PDLIM4P50479 330 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 CNN1P51911 297 aaKnown RBP13.03□□□□□ -0.32
LDLR-204ENST00000545707 RPL15P61313 204 aaKnown RBP13.03□□□□□ -0.32
LDLR-204ENST00000545707 ARSJQ5FYB0 599 aaPredicted RBP13.03□□□□□ -0.32
LDLR-204ENST00000545707 DNLZQ5SXM8 178 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 MRPL41Q8IXM3 137 aaKnown RBP13.03□□□□□ -0.32
LDLR-204ENST00000545707 OCC1Q8TAD7 63 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 SFRP2Q96HF1 295 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 YPEL2Q96QA6 119 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 PLSCR4Q9NRQ2 329 aa13.03□□□□□ -0.32
LDLR-204ENST00000545707 OR4A8P0C604 315 aa13.02□□□□□ -0.32
LDLR-204ENST00000545707 STAG3L2P0CL84 134 aa13.02□□□□□ -0.32
LDLR-204ENST00000545707 STAG3L3P0CL85 134 aa13.02□□□□□ -0.32
LDLR-204ENST00000545707 AARDQ4LEZ3 155 aa13.02□□□□□ -0.32
LDLR-204ENST00000545707 BHLHA15Q7RTS1 189 aaPredicted RBP13.02□□□□□ -0.32
LDLR-204ENST00000545707 DEFB108BQ8NET1 73 aa13.02□□□□□ -0.32
LDLR-204ENST00000545707 RAB1CQ92928 201 aa13.02□□□□□ -0.32
LDLR-204ENST00000545707 CALYQ9NYX4 217 aa13.02□□□□□ -0.32
LDLR-204ENST00000545707 F6UZH7 168 aa13.02□□□□□ -0.33
LDLR-204ENST00000545707 M0R1B8 84 aa13.02□□□□□ -0.33
LDLR-204ENST00000545707 TMPRSS2O15393 492 aa13.02□□□□□ -0.33
LDLR-204ENST00000545707 IL6RP08887 468 aaPredicted RBP13.02□□□□□ -0.33
LDLR-204ENST00000545707 CT45A1Q5HYN5 189 aa13.02□□□□□ -0.33
LDLR-204ENST00000545707 TRAT1Q6PIZ9 186 aa13.02□□□□□ -0.33
LDLR-204ENST00000545707 C1orf162Q8NEQ5 155 aaPredicted RBP13.02□□□□□ -0.33
LDLR-204ENST00000545707 CT45A3Q8NHU0 189 aa13.02□□□□□ -0.33
LDLR-204ENST00000545707 PROCRQ9UNN8 238 aa13.02□□□□□ -0.33
LDLR-204ENST00000545707 SLC17A3O00476 420 aa13.01□□□□□ -0.33
LDLR-204ENST00000545707 RPP30P78346 268 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms