RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 TNFSF18Q9UNG2 199 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 A0A1W2PRX2 142 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 TMEM178BH3BS89 294 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 SFTA3P0C7M3 94 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 TXNDC17Q9BRA2 123 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 NAT8Q9UHE5 227 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 TEX261Q6UWH6 196 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 DNAJC4Q9NNZ3 241 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 MYO7BQ6PIF6 2116 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 Q5PR19 223 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 MINOS1Q5TGZ0 78 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 WDR25Q64LD2 544 aaPredicted RBP11.94□□□□□ -0.5
COLCA1-204ENST00000540738 NXF2Q9GZY0 626 aaKnown RBP11.94□□□□□ -0.5
COLCA1-204ENST00000540738 MINOS1-NBL1R4GNA1 71 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 SPTAN1Q13813 2472 aaKnown RBP11.94□□□□□ -0.5
COLCA1-204ENST00000540738 RGS13O14921 159 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 FOXG1P55316 489 aaPredicted RBP11.94□□□□□ -0.5
COLCA1-204ENST00000540738 FAM74A3Q4VXF1 159 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 CLEC9AQ6UXN8 241 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 C1QL2Q7Z5L3 287 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 OR5AU1Q8NGC0 362 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 PTBP3O95758 552 aaKnown RBP11.94□□□□□ -0.5
COLCA1-204ENST00000540738 MGPP08493 103 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 HKR1P10072 659 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 BATFQ16520 125 aa11.94□□□□□ -0.5
COLCA1-204ENST00000540738 LOC102723971A0A1B0GUV8 181 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 FAM181BA6NEQ2 426 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 SRSF10O75494 262 aaKnown RBP11.93□□□□□ -0.5
COLCA1-204ENST00000540738 LRP11Q86VZ4 500 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 OR51G1Q8NGK1 321 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 PRO3102Q9H379 93 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 G0S2P27469 103 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 LGALSLQ3ZCW2 172 aaPredicted RBP11.93□□□□□ -0.5
COLCA1-204ENST00000540738 H1FOOQ8IZA3 346 aaPredicted RBP11.93□□□□□ -0.5
COLCA1-204ENST00000540738 SOSTQ9BQB4 213 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 PLSCR2Q9NRY7 297 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 LYRM2Q9NU23 88 aaPredicted RBP11.93□□□□□ -0.5
COLCA1-204ENST00000540738 ALPK2Q86TB3 2170 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 OR10G8Q8NGN5 311 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 SPTBN1Q01082 2364 aaKnown RBP11.93□□□□□ -0.5
COLCA1-204ENST00000540738 FCER1GP30273 86 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 ZNF79Q15937 498 aa11.93□□□□□ -0.5
COLCA1-204ENST00000540738 DPRXA6NFQ7 191 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 PLA2G10O15496 165 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 PAGE4O60829 102 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 IL4P05112 153 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 NABP1Q96AH0 204 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 MOB4Q9Y3A3 225 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 TMEM155Q4W5P6 130 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 PRNTQ86SH4 94 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 VKORC1L1Q8N0U8 176 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 FGFBP3Q8TAT2 258 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 AKAP6Q13023 2319 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 M0R1W7 72 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 ATP6V0CP27449 155 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 CEACAM8P31997 349 aaPredicted RBP11.92□□□□□ -0.5
COLCA1-204ENST00000540738 P2RY4P51582 365 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 SUMO1P63165 101 aaKnown RBP11.92□□□□□ -0.5
COLCA1-204ENST00000540738 DLK1P80370 383 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 TMEM177Q53S58 311 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 CLLU1Q5K131 121 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 BSXQ3C1V8 233 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 NPIPB3Q92617 1050 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 SMIM8Q96KF7 97 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 NEURL2Q9BR09 285 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 TRAPPC1Q9Y5R8 145 aa11.92□□□□□ -0.5
COLCA1-204ENST00000540738 CD74P04233 296 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 TDGF1P13385 188 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 RNF212Q495C1 297 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 C3orf36Q3SXR2 165 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 SEC11CQ9BY50 192 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 MRPL32Q9BYC8 188 aaKnown RBP11.91□□□□□ -0.5
COLCA1-204ENST00000540738 C8orf88P0DMB2 117 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 CAMPP49913 170 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 RND3P61587 244 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 ZNF345Q14585 488 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 NPDC1Q9NQX5 325 aaPredicted RBP11.91□□□□□ -0.5
COLCA1-204ENST00000540738 SLC2A8Q9NY64 477 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 ZP3P21754 424 aa11.91□□□□□ -0.5
COLCA1-204ENST00000540738 PLPPR1Q8TBJ4 325 aa11.9□□□□□ -0.5
COLCA1-204ENST00000540738 ANAPC16Q96DE5 110 aa11.9□□□□□ -0.5
COLCA1-204ENST00000540738 GPR61Q9BZJ8 451 aa11.9□□□□□ -0.5
COLCA1-204ENST00000540738 MED19A0JLT2 244 aaPredicted RBP11.9□□□□□ -0.5
COLCA1-204ENST00000540738 ADIPOQQ15848 244 aa11.9□□□□□ -0.5
COLCA1-204ENST00000540738 C19orf35Q6ZS72 473 aa11.9□□□□□ -0.5
COLCA1-204ENST00000540738 C3orf56Q8N813 242 aa11.9□□□□□ -0.5
COLCA1-204ENST00000540738 GATAD1Q8WUU5 269 aa11.9□□□□□ -0.5
COLCA1-204ENST00000540738 PLXNA4Q9HCM2 1894 aa11.9□□□□□ -0.5
COLCA1-204ENST00000540738 TMEM189A5PLL7 270 aa11.9□□□□□ -0.51
COLCA1-204ENST00000540738 VMO1Q7Z5L0 202 aa11.9□□□□□ -0.51
COLCA1-204ENST00000540738 LDLRAD3Q86YD5 345 aa11.9□□□□□ -0.51
COLCA1-204ENST00000540738 NPIPB6E9PJ23 425 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 GPX1P07203 203 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 MELTFP08582 738 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 ZNF497Q6ZNH5 498 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 RGP1Q92546 391 aaPredicted RBP11.89□□□□□ -0.51
COLCA1-204ENST00000540738 TAF15Q92804 592 aaKnown RBP eCLIP11.89□□□□□ -0.51
COLCA1-204ENST00000540738 FCN1O00602 326 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 PLAUP00749 431 aa11.89□□□□□ -0.51
COLCA1-204ENST00000540738 IGFBP3P17936 291 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms