RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 H0Y8X5 98 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 SCTP09683 121 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 CTGFP29279 349 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 ID4P47928 161 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 FAM19A2Q8N3H0 131 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 OSR1Q8TAX0 266 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 CITED2Q99967 270 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 SHISA8B8ZZ34 492 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 SNAI2O43623 268 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 CRPP02741 224 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 ADMP35318 185 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 LEPP41159 167 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 ECSCRQ19T08 205 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 OTORQ9NRC9 128 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 FOXD3Q9UJU5 478 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 N4BP2Q86UW6 1770 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 TRAV1-1A0A0B4J248 108 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 ZP1P60852 638 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 Q5BKY6 102 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 CCL4L1Q8NHW4 92 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 IFI27L2Q9H2X8 130 aa9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 CHTOPQ9Y3Y2 248 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-208ENST00000508501 hCG_38984A0A1B0GV85 526 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 F2Z2F3 143 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 SP9P0CG40 484 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 C2orf82Q6UX34 121 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 LINC01555Q8NAE3 123 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 PIMREGQ9BSJ6 248 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 LY96Q9Y6Y9 160 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 A0A1B0GTI1 187 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 HIGD1CA8MV81 97 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 VWC2LB2RUY7 222 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 OR2H2O95918 312 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 IL11P20809 199 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 LHX2P50458 406 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 ICAM4Q14773 271 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 WDR82Q6UXN9 313 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 EEF1AKMT3Q96AZ1 226 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 VKORC1Q9BQB6 163 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 C20orf144Q9BQM9 153 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 DLL3Q9NYJ7 618 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 NUP188Q5SRE5 1749 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 CD5P06127 495 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 CT62P0C5K7 136 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 TDGF1P3P51864 188 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 NXPH1P58417 271 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 PCSK4Q6UW60 755 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 LINC00305Q7Z4B0 112 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 WFDC3Q8IUB2 231 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 COX14Q96I36 57 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 LRRC61Q9BV99 259 aa9.59□□□□□ -0.87
LIMCH1-208ENST00000508501 FABP5P3A8MUU1 101 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 PRKNO60260 465 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 MPZP25189 248 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 RASL10BQ96S79 203 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 TMEM74BQ9NUR3 256 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 FAM181BA6NEQ2 426 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 NPIPB11E5RHQ5 1161 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 NDUFA3O95167 84 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 P2RY6Q15077 328 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 OR9G1Q8NH87 305 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 MYEOVQ96EZ4 313 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 ATP6V0BQ99437 205 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 FOXQ1Q9C009 403 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 PLAC1Q9HBJ0 212 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 CALYQ9NYX4 217 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 NAV1Q8NEY1 1877 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 IGHV3-13P01766 116 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 IGHV3-7P01780 117 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 PATE4P0C8F1 98 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 DEFB109BQ30KR1 87 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 KLF17Q5JT82 389 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 TEX45Q8NA69 505 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 FAM57AQ8TBR7 257 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 SPINT1O43278 529 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 RAMP1O60894 148 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 TFPI2P48307 235 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 TMEM155Q4W5P6 130 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 C19orf48Q6RUI8 117 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 BCL6BQ8N143 479 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 NPIPB3Q92617 1050 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 TM2D1Q9BX74 207 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 PRDM14Q9GZV8 571 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 WBP1LQ9NX94 342 aa9.58□□□□□ -0.88
LIMCH1-208ENST00000508501 TOMM40O96008 361 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 TGIF1Q15583 401 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 TSKUQ8WUA8 353 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 EAF1Q96JC9 268 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 TMEM8BA6NDV4 472 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 PLAUP00749 431 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 HIST1H4AP62805 103 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 SLC25A47Q6Q0C1 308 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 SLC25A48Q6ZT89 311 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 SRCAPQ6ZRS2 3230 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 UTF1Q5T230 341 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 TMEM144Q7Z5S9 345 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 SLC50A1Q9BRV3 221 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 IGKV3-7A0A075B6H7 116 aa9.57□□□□□ -0.88
LIMCH1-208ENST00000508501 IGHV1OR21-1A0A087WYE8 117 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms