RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 C8orf4Q9NR00 106 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 ZNHIT6Q9NWK9 470 aaKnown RBP0.44□□□□□ -2.34
VPS50-216ENST00000484954 DKKL1Q9UK85 242 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 ANAPC10Q9UM13 185 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 ROS1P08922 2347 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 NUMA1Q14980 2115 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 TRBV6-5A0A0K0K1A5 114 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 A0A1B0GW54 56 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 IBA57-AS1B1ANH7 110 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 TRAPPC2LH3BP13 241 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 KRT75O95678 551 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 SERPINA7P05543 415 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 COX5BP10606 129 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 CD40LGP29965 261 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 EVX1P49640 407 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 TAS2R20P59543 309 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 RAB14P61106 215 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 TMEM258P61165 79 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 BTN3A2P78410 334 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 MED21Q13503 144 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 MOGQ16653 247 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 SLC36A2Q495M3 483 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 FAM78BQ5VT40 261 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 CST9Q5W186 159 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 SFXN4Q6P4A7 337 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 TNFAIP8L2Q6P589 184 aaPredicted RBP0.43□□□□□ -2.34
VPS50-216ENST00000484954 UNQ6190/PRO20217Q6UXQ8 127 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 ZNF705AQ6ZN79 300 aaPredicted RBP0.43□□□□□ -2.34
VPS50-216ENST00000484954 FP248Q71RG6 208 aaPredicted RBP0.43□□□□□ -2.34
VPS50-216ENST00000484954 SLC36A1Q7Z2H8 476 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 RPP25LQ8N5L8 163 aaKnown RBP0.43□□□□□ -2.34
VPS50-216ENST00000484954 UBL4BQ8N7F7 174 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 CHST6Q9GZX3 395 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 CXorf21Q9HAI6 301 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 PRELID1Q9Y255 219 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 POLR1DQ9Y2S0 133 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 FREM1Q5H8C1 2179 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 THSD7AQ9UPZ6 1657 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 CHD5Q8TDI0 1954 aa0.43□□□□□ -2.34
VPS50-216ENST00000484954 C1orf232A0A0U1RR37 186 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 OR51F1A6NGY5 319 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 CXCR6O00574 342 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 PFDN6O15212 129 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 LEPROTO15243 131 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 KLRC4O43908 158 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 KRT7P08729 469 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 GPX2P18283 190 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 RPL12P30050 165 aaKnown RBP0.42□□□□□ -2.34
VPS50-216ENST00000484954 SLCO1A2P46721 670 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 TPI1P60174 286 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 POLR2GP62487 172 aaKnown RBP eCLIP0.42□□□□□ -2.34
VPS50-216ENST00000484954 TMEM42Q69YG0 159 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 FAM151BQ6UXP7 276 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 ZNF550Q7Z398 422 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 KTN1-AS1Q86SY8 53 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 COMMD7Q86VX2 200 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 Q8N2B8 174 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 SLC22A24Q8N4F4 322 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 OR1M1Q8NGA1 313 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 JOSD2Q8TAC2 188 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 DHRS9Q9BPW9 319 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 DOHHQ9BU89 302 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 GPR84Q9NQS5 396 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 NAT8Q9UHE5 227 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 ANGPT4Q9Y264 503 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 C15orf41Q9Y2V0 281 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 TIMM22Q9Y584 194 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 TIMM9Q9Y5J7 89 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 SOX21Q9Y651 276 aaPredicted RBP0.42□□□□□ -2.34
VPS50-216ENST00000484954 LHFPL6Q9Y693 200 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 PXMP4Q9Y6I8 212 aa0.42□□□□□ -2.34
VPS50-216ENST00000484954 DLG5Q8TDM6 1919 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 TRAV38-1A0A0B4J264 116 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 OR4C45A6NMZ5 311 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 HMSDA8MTL9 139 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 C21orf140B9A014 251 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 INMT-MINDY4F8WBC2 141 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 I3L521 148 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 CREBL2O60519 120 aaPredicted RBP0.41□□□□□ -2.34
VPS50-216ENST00000484954 MRPS14O60783 128 aaKnown RBP0.41□□□□□ -2.34
VPS50-216ENST00000484954 FAM228BP0C875 321 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 RPS12P25398 132 aaKnown RBP0.41□□□□□ -2.34
VPS50-216ENST00000484954 PSMB8P28062 276 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 CASQ1P31415 396 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 AKR1C3P42330 323 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 MAP2K4P45985 399 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 CDC34P49427 236 aaPredicted RBP0.41□□□□□ -2.34
VPS50-216ENST00000484954 BLVRAP53004 296 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 AKR1C1Q04828 323 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 KISS1Q15726 138 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 NNATQ16517 81 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 ARHGAP11BQ3KRB8 267 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 C1orf195Q5TG92 126 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 FAM173BQ6P4H8 233 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 ALKAL1Q6UXT8 129 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 C7orf65Q6ZTY9 151 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 HIST2H3AQ71DI3 136 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 SSX8Q7RTT4 187 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 ZNF439Q8NDP4 499 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 GPR32P1Q8NGA4 272 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms