RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 CD24P25063 80 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 LGALS7P47929 136 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 ERVK-16P61578 105 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 CYCSP99999 105 aaKnown RBP6.59□□□□□ -1.35
USP4-210ENST00000483212 RAB32Q13637 225 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 PSG5Q15238 335 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 AANATQ16613 207 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 PDLIM3Q53GG5 364 aaPredicted RBP6.59□□□□□ -1.35
USP4-210ENST00000483212 CXorf66Q5JRM2 361 aaPredicted RBP6.59□□□□□ -1.35
USP4-210ENST00000483212 SSX9Q7RTT3 188 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 H2BFWTQ7Z2G1 175 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 NPBQ8NG41 125 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 OR11H4Q8NGC9 324 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 OR2T35Q8NGX2 323 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 NANPQ8TBE9 248 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 PPP1R1CQ8WVI7 109 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 RRNAD1Q96FB5 475 aaKnown RBP6.59□□□□□ -1.35
USP4-210ENST00000483212 PDCD10Q9BUL8 212 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 RNF126Q9BV68 326 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 PRDM13Q9H4Q3 707 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 TPSG1Q9NRR2 321 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 PLSCR3Q9NRY6 295 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 RCL1Q9Y2P8 373 aaKnown RBP6.59□□□□□ -1.35
USP4-210ENST00000483212 NSG2Q9Y328 171 aa6.59□□□□□ -1.35
USP4-210ENST00000483212 SETXQ7Z333 2677 aaKnown RBP6.58□□□□□ -1.36
USP4-210ENST00000483212 CGB1A6NKQ9 187 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 C15orf61A6NNL5 157 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 K7EPK0 472 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 SLC25A17O43808 307 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 SPDEFO95238 335 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 MPC2O95563 127 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 TMEM50AO95807 157 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 FGF2P09038 288 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 FBP1P09467 338 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 SLC25A4P12235 298 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 MYOD1P15172 320 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 PSMB6P28072 239 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 F2RL1P55085 397 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 OR2B8PP59922 312 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 RPS16P62249 146 aaKnown RBP6.58□□□□□ -1.36
USP4-210ENST00000483212 SSBP2P81877 361 aaPredicted RBP6.58□□□□□ -1.36
USP4-210ENST00000483212 DEFB112Q30KQ8 113 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 THOC7Q6I9Y2 204 aaKnown RBP6.58□□□□□ -1.36
USP4-210ENST00000483212 C11orf87Q6NUJ2 197 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 ZNF429Q86V71 674 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 FAM71E2Q8N5Q1 922 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 TEX45Q8NA69 505 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 DMBX1Q8NFW5 382 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 OR2T10Q8NGZ9 312 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 OR4A5Q8NH83 315 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 RNASE11Q8TAA1 199 aaKnown RBP6.58□□□□□ -1.36
USP4-210ENST00000483212 PPP1R14BQ96C90 147 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 ZNF48Q96MX3 618 aaPredicted RBP6.58□□□□□ -1.36
USP4-210ENST00000483212 SMR3AQ99954 134 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 AIFM2Q9BRQ8 373 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 QTRT1Q9BXR0 403 aaKnown RBP6.58□□□□□ -1.36
USP4-210ENST00000483212 TMEM14BQ9NUH8 114 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 TMEM160Q9NX00 188 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 GSKIPQ9P0R6 139 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 HSPB7Q9UBY9 170 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 FOXA2Q9Y261 457 aaPredicted RBP6.58□□□□□ -1.36
USP4-210ENST00000483212 SIGLEC9Q9Y336 463 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 POMT1Q9Y6A1 747 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 ACANP16112 2415 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 CSPG4Q6UVK1 2322 aa6.58□□□□□ -1.36
USP4-210ENST00000483212 KRTAP4-8A0A0G2JLE6 195 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 A0A1B0GW64 132 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 A6NDX4 124 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 FAM181BA6NEQ2 426 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 FAM90A26D6RGX4 464 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 RRHO14718 337 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 NBR2O15453 112 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 ST8SIA3O43173 380 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 DEDDO75618 318 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 FAM106CPP0CH98 169 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 BRS3P32247 399 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 NKX2-1P43699 371 aaPredicted RBP6.57□□□□□ -1.36
USP4-210ENST00000483212 POLR2GP62487 172 aaKnown RBP eCLIP6.57□□□□□ -1.36
USP4-210ENST00000483212 TNFRSF9Q07011 255 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 LRRC75BQ2VPJ9 315 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 VMA21Q3ZAQ7 101 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 LRRC37A5PQ49AS3 106 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 PRSS54Q6PEW0 395 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 IL17RELQ6ZVW7 336 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 Q8N9W7 124 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 OR52E5Q8NH55 327 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 OR1S1Q8NH92 325 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 VSTM2AQ8TAG5 236 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 TSNAXQ99598 290 aaKnown RBP6.57□□□□□ -1.36
USP4-210ENST00000483212 SSX3Q99909 188 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 ZNF430Q9H8G1 570 aaPredicted RBP6.57□□□□□ -1.36
USP4-210ENST00000483212 YAE1D1Q9NRH1 226 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.57□□□□□ -1.36
USP4-210ENST00000483212 OR5AC2Q9NZP5 309 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 TCF19Q9Y242 345 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 ZNF257Q9Y2Q1 563 aa6.57□□□□□ -1.36
USP4-210ENST00000483212 E7EUB6 86 aa6.56□□□□□ -1.36
USP4-210ENST00000483212 H3BUX3 64 aa6.56□□□□□ -1.36
USP4-210ENST00000483212 FCN1O00602 326 aa6.56□□□□□ -1.36
USP4-210ENST00000483212 NXPH3O95157 252 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms