RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 KHDC3LQ587J8 217 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 Q5BKY6 102 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 FAM216AQ8WUB2 273 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 NEUROG1Q92886 237 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 AQP10Q96PS8 301 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 CLEC5AQ9NY25 188 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 NPIPB11E5RHQ5 1161 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 LDLRAD4O15165 306 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 PAGE4O60829 102 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF250P15622 560 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 NTF4P34130 210 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 SELENOTP62341 195 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 SMIM8Q96KF7 97 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 MS4A10Q96PG2 267 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 SPRY4Q9C004 299 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 VAX2Q9UIW0 290 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 PPP1R2P9O14990 202 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 PSPNO60542 156 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 DKK1O94907 266 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 NHLRC3Q5JS37 347 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 C20orf204Q6ZNR8 217 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 TAF15Q92804 592 aaKnown RBP eCLIP6.19□□□□□ -1.42
SYNE1-213ENST00000448038 WDR61Q9GZS3 305 aaKnown RBP6.19□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM133Q9H2Q1 129 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF106Q9H2Y7 1883 aaKnown RBP6.19□□□□□ -1.42
SYNE1-213ENST00000448038 FAM215AQ9Y5M1 114 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 PCDH15Q96QU1 1955 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 SAA2-SAA4A0A096LPE2 208 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 SH2D7A6NKC9 451 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-213ENST00000448038 RGS13O14921 159 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 MLNRO43193 412 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 SAA2P0DJI9 122 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-213ENST00000448038 MFAP4P55083 255 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 OR4A47Q6IF82 309 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 WDFY1Q8IWB7 410 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 DYNLRB2Q8TF09 96 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 TOLLIPQ9H0E2 274 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 RABAC1Q9UI14 185 aa6.19□□□□□ -1.42
SYNE1-213ENST00000448038 FAM166AQ6J272 317 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 IGFL2Q6UWQ7 119 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 OR11H4Q8NGC9 324 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF430Q9H8G1 570 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-213ENST00000448038 KIAA1549LQ6ZVL6 1849 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 E7EQL1 145 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 G3V3Q6 166 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 EGR1P18146 543 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 FABP9Q0Z7S8 132 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 HSD17B13Q7Z5P4 300 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-213ENST00000448038 FAM157CP0CG43 387 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 NAT1P18440 290 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 BTCP35070 178 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 MIC13Q5XKP0 118 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 WFDC3Q8IUB2 231 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 CD177Q8N6Q3 437 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 PAXXQ9BUH6 204 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 CEACAM4O75871 244 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 IGHV3-48P01763 117 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 RD3LP0DJH9 198 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 DPPA3Q6W0C5 159 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 COLCA1Q6ZS62 124 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 SNRPCP09234 159 aaKnown RBP6.18□□□□□ -1.42
SYNE1-213ENST00000448038 ANGPTL6Q8NI99 470 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 TMEM208Q9BTX3 173 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 NAGKQ9UJ70 344 aa6.18□□□□□ -1.42
SYNE1-213ENST00000448038 UTRNP46939 3433 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 HAX1O00165 279 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 C1QL1O75973 258 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 PLAUP00749 431 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 CD8AP01732 235 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 GALR1P47211 349 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 SULT1A2P50226 295 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 PAFAH1B2P68402 229 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 SLC16A13Q7RTY0 426 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 RNF138Q8WVD3 245 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 TCEAL7Q9BRU2 100 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 METRNQ9UJH8 293 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 GATCO43716 136 aaKnown RBP6.17□□□□□ -1.42
SYNE1-213ENST00000448038 S100A8P05109 93 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF735P0CB33 412 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 RANP62826 216 aaKnown RBP6.17□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF324BQ6AW86 544 aaPredicted RBP6.17□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF660Q6AZW8 331 aaPredicted RBP6.17□□□□□ -1.42
SYNE1-213ENST00000448038 ZNF439Q8NDP4 499 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 EAF1Q96JC9 268 aaPredicted RBP6.17□□□□□ -1.42
SYNE1-213ENST00000448038 LINC00052Q96N35 136 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 CLDN34H7C241 214 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 C2orf68Q2NKX9 166 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 AARDQ4LEZ3 155 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 SIGIRRQ6IA17 410 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 TRAF4Q9BUZ4 470 aaPredicted RBP6.17□□□□□ -1.42
SYNE1-213ENST00000448038 MED13Q9UHV7 2174 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 MPTX1A8MV57 137 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 MOSP00540 346 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 CA2P00918 260 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 SMIM17P0DL12 118 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 ATP5G2Q06055 141 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 CENPVQ7Z7K6 275 aaPredicted RBP6.17□□□□□ -1.42
SYNE1-213ENST00000448038 SSC4DQ8WTU2 575 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 NAT8Q9UHE5 227 aa6.17□□□□□ -1.42
SYNE1-213ENST00000448038 WNK2Q9Y3S1 2297 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms