RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TIMD4Q96H15 378 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GPR82Q96P67 336 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 C11orf68Q9H3H3 251 aaKnown RBP4□□□□□ -1.77
SCN1A-220ENST00000641603 GAGE12JA6NER3 117 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GAGE7O76087 117 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GAGE12FP0CL80 117 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GAGE12GP0CL81 117 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GAGE12IP0CL82 117 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 HOXA4Q00056 320 aaPredicted RBP4□□□□□ -1.77
SCN1A-220ENST00000641603 GAGE4Q13068 117 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 EDDM3AQ14507 147 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 STPG3Q8N7X2 389 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 FER1L6-AS2Q96M78 137 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 OR2J3O76001 311 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 ATP5G1P05496 136 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 ATP5G3P48201 142 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 MRPS11P82912 194 aaKnown RBP4□□□□□ -1.77
SCN1A-220ENST00000641603 ATP5G2Q06055 141 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GAGE5Q13069 117 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GAGE6Q13070 117 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 SLC23A3Q6PIS1 610 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 WNT2BQ93097 391 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 LINC00470Q9BZP3 86 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 STRCQ7RTU9 1775 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 NPIPB6E9PJ23 425 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 LINC00271P0C7V0 271 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 IGLV3-21P80748 117 aaPredicted RBP4□□□□□ -1.77
SCN1A-220ENST00000641603 MUC15Q8N387 334 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 OR10J6PQ8NGY7 276 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 RASL11BQ9BPW5 248 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 PRDM14Q9GZV8 571 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 IGHV1-24A0A0C4DH33 117 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 CEACAM5P06731 702 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 RPS27P42677 84 aaKnown RBP4□□□□□ -1.77
SCN1A-220ENST00000641603 TMEM144Q7Z5S9 345 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GNB2P62879 340 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 NEGR1Q7Z3B1 354 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 RPRMLQ8N4K4 120 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 OR13H1Q8NG92 308 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 DIRC2Q96SL1 478 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 OR2H1Q9GZK4 316 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 LINC00597Q9H2U6 94 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GNB4Q9HAV0 340 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 ATXN7O15265 892 aaPredicted RBP4□□□□□ -1.77
SCN1A-220ENST00000641603 FCN3O75636 299 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 PTGDSP41222 190 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 GAS1P54826 345 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 CXorf66Q5JRM2 361 aaPredicted RBP4□□□□□ -1.77
SCN1A-220ENST00000641603 FAM90A1Q86YD7 464 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 SP7Q8TDD2 431 aaPredicted RBP4□□□□□ -1.77
SCN1A-220ENST00000641603 RLN3Q8WXF3 142 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 SLC25A28Q96A46 364 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 TRAV8-2A0A0B4J237 113 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 UBALD2Q8IYN6 164 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 NABP2Q9BQ15 211 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 TMEM229AB2RXF0 380 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 PPIAL4DF5H284 164 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 SYS1-DBNDD2H3BUS1 97 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 CDX4O14627 284 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 MLNRO43193 412 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 ENSAO43768 121 aaKnown RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 SRYQ05066 204 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 ATXN8Q156A1 80 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 JPT1Q9UK76 154 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 MAP1BP46821 2468 aaKnown RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 SMAD7O15105 426 aaKnown RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 MDKP21741 143 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 MPV17L2Q567V2 206 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 LINC01545Q5VT33 79 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 BATF2Q8N1L9 274 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 LINC01555Q8NAE3 123 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 SLC37A2Q8TED4 501 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 PYGO2Q9BRQ0 406 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 MED19A0JLT2 244 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 DNAL4O96015 105 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 DRD3P35462 400 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 TGIF1Q15583 401 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 TCTEX1D4Q5JR98 221 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 C9orf50Q5SZB4 431 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 CITED1Q99966 193 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 TAF1LQ8IZX4 1826 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 RGPD2P0DJD1 1756 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 M0QZ24 198 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 C3orf79P0CE67 100 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 CD27P26842 260 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 VHLLQ6RSH7 139 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 FGFRL1Q8N441 504 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 WFDC5Q8TCV5 224 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF714Q96N38 554 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 ALKBH3Q96Q83 286 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 DECR2Q9NUI1 292 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 TBC1D29Q9UFV1 150 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 NEUROG3Q9Y4Z2 214 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-220ENST00000641603 LDLRAD4O15165 306 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 LINC00114Q6XXX2 140 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 KLHDC3Q9BQ90 382 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 F2Z2F3 143 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 ZXDAP98168 799 aa3.99□□□□□ -1.77
SCN1A-220ENST00000641603 SLC25A47Q6Q0C1 308 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms