RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 P2RY6Q15077 328 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 TMEM241Q24JQ0 296 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 ZNF672Q499Z4 452 aaPredicted RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 TMEM41BQ5BJD5 291 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 NMSQ5H8A3 153 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 OTPQ5XKR4 325 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 WDR25Q64LD2 544 aaPredicted RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 ZNF774Q6NX45 483 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 VWA1Q6PCB0 445 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 TEX38Q6PEX7 206 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 SLC25A47Q6Q0C1 308 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 ZNF474Q6S9Z5 364 aaPredicted RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 ADAMTSL5Q6ZMM2 481 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 TEX43Q6ZNM6 134 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 FOXL2NBQ6ZUU3 175 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 LHFPL2Q6ZUX7 228 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 H1FNTQ75WM6 255 aaPredicted RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 C16orf82Q7Z2V1 217 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 THNSL2Q86YJ6 484 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 UEVLDQ8IX04 471 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 MRPL41Q8IXM3 137 aaKnown RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 TMEM123Q8N131 208 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 KIR3DL3Q8N743 410 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 OR5D13Q8NGL4 314 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 ZNF721Q8TF20 911 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 NPRL2Q8WTW4 380 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 GATAD1Q8WUU5 269 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 RNF138Q8WVD3 245 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 PGAM5Q96HS1 289 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 TECTBQ96PL2 329 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 SPACA5Q96QH8 159 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 HIST1H2AAQ96QV6 131 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 GAL3ST4Q96RP7 486 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 ADOQ96SZ5 270 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 SMIM7Q9BQ49 75 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 KLHDC3Q9BQ90 382 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 FAAP24Q9BTP7 215 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 TMEM208Q9BTX3 173 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 MRPL13Q9BYD1 178 aaKnown RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 WWTR1Q9GZV5 400 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 OR51B6Q9H340 312 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 GAL3ST2Q9H3Q3 398 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 ZNF665Q9H7R5 613 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 ZNF703Q9H7S9 590 aaPredicted RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 CALHM2Q9HA72 323 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 SERINC1Q9NRX5 453 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 LANCL2Q9NS86 450 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 FKBP11Q9NYL4 201 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 GNG13Q9P2W3 67 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 COPS7AQ9UBW8 275 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 NAGKQ9UJ70 344 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 POLR3KQ9Y2Y1 108 aaPredicted RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 HERC1Q15751 4861 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 LOC105371242A0A075B767 164 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 TRBV11-1A0A0K0K1C0 115 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 C3orf85A0A1B0GTC6 90 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 MAP1LC3B2A6NCE7 125 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A10PA6NDY2 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A18PA6NE21 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A16PA6NEW6 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A20PA6NIJ5 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A8PA6NJQ4 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 LIPT2A6NK58 231 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A7PA6NKC0 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ZFP92A6NM28 416 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ZNF850A8MQ14 1090 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A22PA8MWA6 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A12PA8MX19 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A5PA8MXJ8 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A23PA8MXZ1 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 VWC2LB2RUY7 222 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 MS4A18H0YCH9 400 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ITGB1BP1O14713 200 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 MPPED1O15442 326 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 TRAF3IP2O43734 574 aaPredicted RBP3.46□□□□□ -1.86
LIG3-211ENST00000588713 PDCD6O75340 191 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 TRAPPC6AO75865 159 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 TNFSF13O75888 250 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 SYNGR4O95473 234 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 PPYP01298 95 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 HLA-HP01893 362 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 LCATP04180 440 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 OR4A8P0C604 315 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 RFPL3SP0C7P2 107 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A15PP0C7V4 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A13PP0C7W8 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A14PP0C7W9 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FAM90A24PP0C7X0 464 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 ESDP10768 282 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FCGR2AP12318 317 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 HLA-DOBP13765 273 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 IL11P20809 199 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 VDAC1P21796 283 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 AADACP22760 399 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 GDF1P27539 372 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 OTX1P32242 354 aaPredicted RBP3.46□□□□□ -1.86
LIG3-211ENST00000588713 MDH2P40926 338 aaKnown RBP3.46□□□□□ -1.86
LIG3-211ENST00000588713 PCP4P48539 62 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 BIDP55957 195 aa3.46□□□□□ -1.86
LIG3-211ENST00000588713 FXYD4P59646 89 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms