RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ACER3Q9NUN7 267 aa4.58□□□□□ -1.68
CD44-236ENST00000533222 C1orf123Q9NWV4 160 aa4.58□□□□□ -1.68
CD44-236ENST00000533222 TRMT112Q9UI30 125 aaKnown RBP4.58□□□□□ -1.68
CD44-236ENST00000533222 LSM5Q9Y4Y9 91 aaKnown RBP4.58□□□□□ -1.68
CD44-236ENST00000533222 OR1A2Q9Y585 309 aa4.58□□□□□ -1.68
CD44-236ENST00000533222 MPC1Q9Y5U8 109 aa4.58□□□□□ -1.68
CD44-236ENST00000533222 HEBP2Q9Y5Z4 205 aa4.58□□□□□ -1.68
CD44-236ENST00000533222 KMT2EQ8IZD2 1858 aa4.58□□□□□ -1.68
CD44-236ENST00000533222 TMEM131Q92545 1883 aa4.58□□□□□ -1.68
CD44-236ENST00000533222 ITGB4P16144 1822 aa4.58□□□□□ -1.68
CD44-236ENST00000533222 XIRP1Q702N8 1843 aaKnown RBP4.58□□□□□ -1.68
CD44-236ENST00000533222 BAZ2BQ9UIF8 2168 aaKnown RBP4.57□□□□□ -1.68
CD44-236ENST00000533222 FAM231BA6NCW3 169 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 FAM90A20PA6NIJ5 464 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 FAM90A26D6RGX4 464 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 MS4A18H0YCH9 400 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 H3BMG7 143 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 J3QLI3 93 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 CLDN5O00501 218 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 CHST1O43916 411 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 OR2J3O76001 311 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 ZNF682O95780 498 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 OR2H2O95918 312 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 RFPL3SP0C7P2 107 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 IFITM1P13164 125 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 MMP9P14780 707 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 AADACP22760 399 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 BLVRBP30043 206 aaPredicted RBP4.57□□□□□ -1.68
CD44-236ENST00000533222 PRDX3P30048 256 aaKnown RBP4.57□□□□□ -1.68
CD44-236ENST00000533222 IER3P46695 156 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 GALR1P47211 349 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 SGSHP51688 502 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 FUT6P51993 359 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 ZNF133P52736 654 aaPredicted RBP4.57□□□□□ -1.68
CD44-236ENST00000533222 ZNF121P58317 390 aaPredicted RBP4.57□□□□□ -1.68
CD44-236ENST00000533222 OSTNP61366 133 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 RND3P61587 244 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 PSG4Q00888 419 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 KLRB1Q12918 225 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 HES1Q14469 280 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 NFATC4Q14934 902 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 ELOCQ15369 112 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 CCL15Q16663 113 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 MPV17LQ2QL34 196 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 RPL7L1Q6DKI1 246 aaKnown RBP4.57□□□□□ -1.68
CD44-236ENST00000533222 SLC25A47Q6Q0C1 308 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 FAM57BQ71RH2 274 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 PRR22Q8IZ63 422 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 OR8B12Q8NGG6 310 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 OR10G8Q8NGN5 311 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 OR10J6PQ8NGY7 276 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 OR9G1Q8NH87 305 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 RTN4IP1Q8WWV3 396 aaPredicted RBP4.57□□□□□ -1.68
CD44-236ENST00000533222 ABHD14BQ96IU4 210 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 TMEM191AQ9H0A3 160 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 ELOVL3Q9HB03 270 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 CISHQ9NSE2 258 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 CLCF1Q9UBD9 225 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 NHSQ6T4R5 1651 aa4.57□□□□□ -1.68
CD44-236ENST00000533222 A0A1B0GV50 99 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 TINCRA0A1B0GVN0 87 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 OR4C46A6NHA9 309 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 FOXI3A8MTJ6 420 aaPredicted RBP4.56□□□□□ -1.68
CD44-236ENST00000533222 ZNF736B4DX44 427 aaPredicted RBP4.56□□□□□ -1.68
CD44-236ENST00000533222 C9JAW5 83 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 K7ENP7 123 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 PITX3O75364 302 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 IGKV5-2P06315 115 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 SP9P0CG40 484 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 CNTFRP26992 372 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 RBMXP38159 391 aaKnown RBP4.56□□□□□ -1.68
CD44-236ENST00000533222 TNFSF9P41273 254 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 CDKN2AP42771 156 aaKnown RBP4.56□□□□□ -1.68
CD44-236ENST00000533222 NKX2-1P43699 371 aaPredicted RBP4.56□□□□□ -1.68
CD44-236ENST00000533222 ZNF83P51522 516 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 GNB2P62879 340 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 MZT1Q08AG7 82 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 ACSM2AQ08AH3 577 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 MPV17L2Q567V2 206 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 TSPO2Q5TGU0 170 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 ACSM2BQ68CK6 577 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 DMKNQ6E0U4 476 aaPredicted RBP4.56□□□□□ -1.68
CD44-236ENST00000533222 LCN15Q6UWW0 184 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 SHISA6Q6ZSJ9 500 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 ZNF615Q8N8J6 731 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 CYB561D1Q8N8Q1 229 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 TMEM178AQ8NBL3 297 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 ZNF740Q8NDX6 193 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 CLDND2Q8NHS1 167 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 JOSD2Q8TAC2 188 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 STAG3L4Q8TBR4 150 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 RPS4Y2Q8TD47 263 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 TMEM101Q96IK0 257 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 PRADC1Q9BSG0 188 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 GPR174Q9BXC1 333 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 DEFB129Q9H1M3 183 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 MANBALQ9NQG1 85 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 IDI2-AS1Q9NZ38 188 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 ZNF581Q9P0T4 197 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 LAMP3Q9UQV4 416 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms