RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 HLA-DQA1Q5Y7H0 255 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 LCN12Q6JVE5 192 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 SLC48A1Q6P1K1 146 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 EBLN2Q6P2I7 272 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 RASL11AQ6T310 242 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 GLIPR1L1Q6UWM5 242 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 TMEM136Q6ZRR5 245 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 Q6ZS92 163 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 SHISA6Q6ZSJ9 500 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 CPEB2Q7Z5Q1 589 aaKnown RBP4.89□□□□□ -1.63
CD44-225ENST00000527326 ODF3L1Q8IXM7 274 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 C2orf73Q8N5S3 287 aaPredicted RBP4.89□□□□□ -1.63
CD44-225ENST00000527326 TMEM251Q8N6I4 163 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 TPRX1Q8N7U7 411 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 LRRC75AQ8NAA5 344 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 OR4X2Q8NGF9 303 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 OR10G9Q8NGN4 311 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 OR9G4Q8NGQ1 327 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 OR10G6Q8NH81 332 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 OR1L1Q8NH94 360 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 LMX1AQ8TE12 382 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 NRGNQ92686 78 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 TMEM54Q969K7 222 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 ZNF689Q96CS4 500 aaPredicted RBP4.89□□□□□ -1.63
CD44-225ENST00000527326 RCHY1Q96PM5 261 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 NRTNQ99748 197 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 VGLL1Q99990 258 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 VN1R3Q9BXE9 311 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 TMEM126AQ9H061 195 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 OR10A2Q9H208 303 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 MED29Q9NX70 200 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 CLCF1Q9UBD9 225 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 KCNS2Q9ULS6 477 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 UNC80Q8N2C7 3258 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 COL4A3Q01955 1670 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 SCN2AQ99250 2005 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 SPTBN5Q9NRC6 3674 aaKnown RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 A0A087WX48 190 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 A0A087X0K7 114 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 CENPVL3A0A0U1RRI6 287 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 LINC01553A4QN01 128 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 FOXI3A8MTJ6 420 aaPredicted RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 F5H5K5 113 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 M0QXV9 152 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 PTGESO14684 152 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 SLC31A1O15431 190 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 TNFSF12O43508 249 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 SRSF10O75494 262 aaKnown RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 NUDT14O95848 222 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 BGLAPP02818 100 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 IFI6P09912 130 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 CST5P28325 142 aaPredicted RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 SRIP30626 198 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 KIR2DL1P43626 348 aaPredicted RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 OR3A4PP47883 348 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 CLDN2P57739 230 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 RPL11P62913 178 aaKnown RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 SP6Q3SY56 376 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 ZFAND6Q6FIF0 208 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 TRAT1Q6PIZ9 186 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 SLC25A47Q6Q0C1 308 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 C2orf91Q6ZV80 131 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 TMEM25Q86YD3 366 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 ZNF695Q8IW36 515 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 ZNF525Q8N782 197 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 GATSQ8NAP1 163 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 ZNF740Q8NDX6 193 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 OR8B12Q8NGG6 310 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 OR4C3Q8NH37 302 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 OR52N5Q8NH56 324 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 C8orf46Q8TAG6 207 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 DAZLQ92904 295 aaKnown RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 PIGTQ969N2 578 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 ST6GALNAC6Q969X2 333 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 APOBEC3DQ96AK3 386 aaPredicted RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 CNRIP1Q96F85 164 aaPredicted RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 ARHGAP5-AS1Q96IT6 56 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 SPAG8Q99932 426 aaPredicted RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 TMEM204Q9BSN7 226 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 RTN4RQ9BZR6 473 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 CHRNA10Q9GZZ6 450 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 TMEM222Q9H0R3 208 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 TMEM133Q9H2Q1 129 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 VSIRQ9H7M9 311 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 SAP30LQ9HAJ7 183 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 THAP10Q9P2Z0 257 aaPredicted RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 ANXA10Q9UJ72 324 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 ZNF835Q9Y2P0 537 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 CSDC2Q9Y534 153 aaKnown RBP4.88□□□□□ -1.63
CD44-225ENST00000527326 LINC00312Q9Y6C7 94 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 CENPFP49454 3210 aa4.88□□□□□ -1.63
CD44-225ENST00000527326 DOCK6Q96HP0 2047 aa4.87□□□□□ -1.63
CD44-225ENST00000527326 C3orf85A0A1B0GTC6 90 aa4.87□□□□□ -1.63
CD44-225ENST00000527326 TMEM8BA6NDV4 472 aa4.87□□□□□ -1.63
CD44-225ENST00000527326 FABP5P3A8MUU1 101 aa4.87□□□□□ -1.63
CD44-225ENST00000527326 C9JCJ5 164 aa4.87□□□□□ -1.63
CD44-225ENST00000527326 SYS1-DBNDD2H3BUS1 97 aa4.87□□□□□ -1.63
CD44-225ENST00000527326 BMPR1BO00238 502 aa4.87□□□□□ -1.63
CD44-225ENST00000527326 SLC16A7O60669 478 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms