RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 RPL31P62899 125 aaKnown RBP11.67□□□□□ -0.54
USP49-203ENST00000394253 PMVKQ15126 192 aa11.67□□□□□ -0.54
USP49-203ENST00000394253 DEFB109BQ30KR1 87 aa11.67□□□□□ -0.54
USP49-203ENST00000394253 C1orf185Q5T7R7 199 aa11.67□□□□□ -0.54
USP49-203ENST00000394253 PRDM13Q9H4Q3 707 aa11.67□□□□□ -0.54
USP49-203ENST00000394253 ASB10Q8WXI3 467 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 WDR54Q9H977 334 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 CLDND2Q8NHS1 167 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 MZB1Q8WU39 189 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 ARID2Q68CP9 1835 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 FMC1Q96HJ9 113 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 CD300CQ08708 224 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 CENPWQ5EE01 88 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 ST6GALNAC3Q8NDV1 305 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 OR10W1Q8NGF6 305 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 TNFRSF19Q9NS68 423 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 IGHV3OR16-12A0A075B7B8 117 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 NPIPB4C9JG80 1138 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 CCSMST1Q4G0I0 132 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 TMEM222Q9H0R3 208 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 CST9LQ9H4G1 147 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 NHP2Q9NX24 153 aaKnown RBP11.66□□□□□ -0.54
USP49-203ENST00000394253 NMBP08949 121 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 HOXD4P09016 255 aaPredicted RBP11.66□□□□□ -0.54
USP49-203ENST00000394253 TDGF1P13385 188 aa11.66□□□□□ -0.54
USP49-203ENST00000394253 RIF1Q5UIP0 2472 aaKnown RBP11.65□□□□□ -0.54
USP49-203ENST00000394253 TNFRSF9Q07011 255 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 INSL4Q14641 139 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 HIKESHIQ53FT3 197 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 TAF15Q92804 592 aaKnown RBP eCLIP11.65□□□□□ -0.54
USP49-203ENST00000394253 DPH3P1Q9H4G8 78 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 PLXNA2O75051 1894 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 KLK8O60259 260 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 ISG15P05161 165 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 DANCRP0C864 163 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 RNASEH2CQ8TDP1 164 aaKnown RBP11.65□□□□□ -0.54
USP49-203ENST00000394253 LOXL2Q9Y4K0 774 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 ABCA3Q99758 1704 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 TICRRQ7Z2Z1 1910 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 MEX3AA1L020 520 aaKnown RBP11.65□□□□□ -0.54
USP49-203ENST00000394253 K7ESM1 405 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 CCL28Q9NRJ3 127 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 TMEM238C9JI98 176 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 FXYD3Q14802 87 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 IFI27P40305 119 aaPredicted RBP11.65□□□□□ -0.54
USP49-203ENST00000394253 MRPL24Q96A35 216 aaKnown RBP11.65□□□□□ -0.54
USP49-203ENST00000394253 MFRPQ9BY79 579 aa11.65□□□□□ -0.54
USP49-203ENST00000394253 C17orf47Q8NEP4 570 aa11.65□□□□□ -0.55
USP49-203ENST00000394253 NDUFAF3Q9BU61 184 aa11.65□□□□□ -0.55
USP49-203ENST00000394253 C8orf88P0DMB2 117 aa11.65□□□□□ -0.55
USP49-203ENST00000394253 MDKP21741 143 aaPredicted RBP11.65□□□□□ -0.55
USP49-203ENST00000394253 DLX4Q92988 240 aaPredicted RBP11.65□□□□□ -0.55
USP49-203ENST00000394253 TOMM7Q9P0U1 55 aa11.65□□□□□ -0.55
USP49-203ENST00000394253 LINC01549A6NIU2 74 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 LINC00587B1AMM8 73 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 PEX7O00628 323 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 P2RY4P51582 365 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 TRAV5A0A0B4J249 113 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 ZNF146Q15072 292 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 GNRHR2Q96P88 292 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 DPM2O94777 84 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 TNFSF15O95150 251 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 TMEM258P61165 79 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 ERVK11-1P61568 191 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 MORN3Q6PF18 240 aaPredicted RBP11.64□□□□□ -0.55
USP49-203ENST00000394253 C9orf153Q5TBE3 101 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 ST20Q9HBF5 79 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 SDF2L1Q9HCN8 221 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 APOHP02749 345 aaPredicted RBP11.64□□□□□ -0.55
USP49-203ENST00000394253 FAM89BQ8N5H3 189 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 SERGEFQ9UGK8 458 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 USP54Q70EL1 1684 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 PGPA6NDG6 321 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 OR9G4Q8NGQ1 327 aa11.64□□□□□ -0.55
USP49-203ENST00000394253 A0A087WWC5 75 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 A0A1W2PRS3 328 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 COL9A3Q14050 684 aaPredicted RBP11.63□□□□□ -0.55
USP49-203ENST00000394253 FRMPD3Q5JV73 1810 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 A0A1W2PRD5 423 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 A0A1W2PRF3 423 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 A0A1W2PRM7 423 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 CTLA4P16410 223 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 UCP3P55916 312 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 CEACAM21Q3KPI0 293 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 HOGA1Q86XE5 327 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 RNF7Q9UBF6 113 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 SUMO4Q6EEV6 95 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 PAQR9Q6ZVX9 377 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 IGKV6D-21A0A0A0MT36 114 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 RPL36A-HNRNPH2H7BZ11 118 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 DUTP33316 252 aaKnown RBP11.63□□□□□ -0.55
USP49-203ENST00000394253 GGTLC1Q9BX51 225 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 UBR3Q6ZT12 1888 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 SOCS1O15524 211 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 OCIAD2Q56VL3 154 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 TLNRD1Q9H1K6 362 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 THAP10Q9P2Z0 257 aaPredicted RBP11.63□□□□□ -0.55
USP49-203ENST00000394253 SBF1O95248 1867 aa11.63□□□□□ -0.55
USP49-203ENST00000394253 LILRA5A6NI73 299 aa11.62□□□□□ -0.55
USP49-203ENST00000394253 RPL27AP46776 148 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms