RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 LRRC29Q8WV35 223 aa12.12□□□□□ -0.47
RTF1-201ENST00000389629 SGK494Q96LW2 274 aa12.12□□□□□ -0.47
RTF1-201ENST00000389629 PLSCR2Q9NRY7 297 aa12.12□□□□□ -0.47
RTF1-201ENST00000389629 A0A1B0GUS0 222 aa12.12□□□□□ -0.47
RTF1-201ENST00000389629 LINC00596Q86U02 117 aa12.12□□□□□ -0.47
RTF1-201ENST00000389629 WDR54Q9H977 334 aa12.12□□□□□ -0.47
RTF1-201ENST00000389629 PNRC2Q9NPJ4 139 aaKnown RBP12.12□□□□□ -0.47
RTF1-201ENST00000389629 SHANK1Q9Y566 2161 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 MARCH11A6NNE9 402 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 HBZP02008 142 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 VKORC1L1Q8N0U8 176 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 YTHDF2Q9Y5A9 579 aaKnown RBP12.11□□□□□ -0.47
RTF1-201ENST00000389629 CEACAM18A8MTB9 384 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 SLC25A53Q5H9E4 307 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 OR10X1Q8NGY0 326 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 IGKV1-27A0A075B6S5 117 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 A0A1W2PQM1 296 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 E9PLN8 166 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 GDF9O60383 454 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 PCOLCEQ15113 449 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 OR8A1Q8NGG7 326 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 C1orf147Q96MC9 270 aaPredicted RBP12.11□□□□□ -0.47
RTF1-201ENST00000389629 NRN1Q9NPD7 142 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 TCFL5Q9UL49 500 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 CTSSP25774 331 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 FAM90A2PQ658T7 463 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 OR1L4Q8NGR5 311 aa12.11□□□□□ -0.47
RTF1-201ENST00000389629 TDGF1P3P51864 188 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 OR8B3Q8NGG8 313 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 OR4S2Q8NH73 311 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 OR8B2Q96RD0 313 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 ROS1P08922 2347 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 LRRC30A6NM36 301 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 SPRY3O43610 288 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 SMPD2O60906 423 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 CCL11P51671 97 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 ZBTB34Q8NCN2 500 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 RAB37Q96AX2 223 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 FAM90A26D6RGX4 464 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 SP1P08047 785 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 SFTPCP11686 197 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 COMPP49747 757 aaPredicted RBP12.1□□□□□ -0.47
RTF1-201ENST00000389629 OR2V2Q96R30 315 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 ODAMA1E959 279 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 B4E171 279 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 RHBDL1O75783 438 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 NPSP0C0P6 89 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 TSPAN7P41732 249 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 CFHR1Q03591 330 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 CENPWQ5EE01 88 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 ZNF826PQ6ZT77 177 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 PRDM14Q9GZV8 571 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 SAP30LQ9HAJ7 183 aa12.1□□□□□ -0.47
RTF1-201ENST00000389629 CNIH1O95406 144 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 P01737 135 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 GCSAMLQ5JQS6 135 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 RIPPLY2Q5TAB7 128 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 SLC25A34Q6PIV7 304 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 MDP1Q86V88 176 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 RPP25LQ8N5L8 163 aaKnown RBP12.09□□□□□ -0.47
RTF1-201ENST00000389629 BCL2L2Q92843 193 aaPredicted RBP12.09□□□□□ -0.47
RTF1-201ENST00000389629 FLYWCH2Q96CP2 140 aaKnown RBP12.09□□□□□ -0.47
RTF1-201ENST00000389629 TRGV10A0A0A0MS01 117 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 PLAUP00749 431 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 FOXA3P55318 350 aaPredicted RBP12.09□□□□□ -0.47
RTF1-201ENST00000389629 MBD3L1Q8WWY6 194 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 CYYR1Q96J86 154 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 TXNDC17Q9BRA2 123 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 TRGV5A0A0B4J1U4 118 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 ISLRO14498 428 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 RRHO14718 337 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 SNAI2O43623 268 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 NUDT3O95989 172 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 MEOX1P50221 254 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 IL36BQ9NZH7 164 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 ZNF106Q9H2Y7 1883 aaKnown RBP12.09□□□□□ -0.47
RTF1-201ENST00000389629 PPIHO43447 177 aaKnown RBP12.09□□□□□ -0.47
RTF1-201ENST00000389629 LEPROTL1O95214 131 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 PDPNQ86YL7 162 aa12.09□□□□□ -0.47
RTF1-201ENST00000389629 TNFSF13O75888 250 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 COL8A1P27658 744 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 SOX8P57073 446 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 GNB2P62879 340 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 MRPS11P82912 194 aaKnown RBP12.08□□□□□ -0.48
RTF1-201ENST00000389629 SSPNQ14714 243 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 SLC25A40Q8TBP6 338 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 IL36GQ9NZH8 169 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 MPDU1O75352 247 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 AMY1AP04745 511 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 RFPL3SP0C7P2 107 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 FAM87AP0C7U9 286 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 TRA2AQ13595 282 aaKnown RBP eCLIP12.08□□□□□ -0.486e-8■■■■□ 20.2
RTF1-201ENST00000389629 C12orf54Q6X4T0 127 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 ZNF645Q8N7E2 425 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 OR1B1Q8NGR6 318 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 CEP350Q5VT06 3117 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 FADS6Q8N9I5 356 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 CT55Q8WUE5 264 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 DERL1Q9BUN8 251 aa12.08□□□□□ -0.48
RTF1-201ENST00000389629 SELENOKQ9Y6D0 94 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms