RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ANAPC13Q9BS18 74 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 PEF1Q9UBV8 284 aaKnown RBP6.83□□□□□ -1.32
CIITA-201ENST00000324288 KCNE5Q9UJ90 142 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 IGHV3-66A0A0C4DH42 116 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 RPL36A-HNRNPH2H7BZ11 118 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 DLL1O00548 723 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 C1RLQ9NZP8 487 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 IGHV1OR15-9A0A0B4J2B8 117 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 LEPROTL1O95214 131 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 IL9P15248 144 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 TMEM262E9PQX1 116 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 SYNGR1O43759 233 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 OR10AG1Q8NH19 301 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 TICRRQ7Z2Z1 1910 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 ACACBO00763 2458 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 SLC17A3O00476 420 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 RAMP1O60894 148 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 PTP4A3O75365 173 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 C1QCP02747 245 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 VKORC1L1Q8N0U8 176 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 ST6GALNAC2Q9UJ37 374 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 RLFQ13129 1914 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 IGHV3-23P01764 117 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 STAG3L3P0CL85 134 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 NANOS3P60323 173 aaKnown RBP6.83□□□□□ -1.32
CIITA-201ENST00000324288 GAB4Q2WGN9 574 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 FAM19A2Q8N3H0 131 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 WDR54Q9H977 334 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 PHLDA3Q9Y5J5 127 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 DPRXA6NFQ7 191 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 CTDSPLO15194 276 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 RBFOX2O43251 390 aaKnown RBP eCLIP6.83□□□□□ -1.32
CIITA-201ENST00000324288 VSIG8P0DPA2 414 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 GPR6P46095 362 aaPredicted RBP6.83□□□□□ -1.32
CIITA-201ENST00000324288 CX3CL1P78423 397 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 ZAR1Q86SH2 424 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 KIAA1551Q9HCM1 1747 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 K7N7A8 449 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 IL11P20809 199 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 VN1R4Q7Z5H5 301 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 H1FOOQ8IZA3 346 aaPredicted RBP6.82□□□□□ -1.32
CIITA-201ENST00000324288 TMEM252Q8N6L7 170 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 PMCHL2Q9BQD1 86 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 ACANP16112 2415 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 PATE3B3GLJ2 98 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 RRHO14718 337 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 KIAA0040Q15053 153 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 TMEM174Q8WUU8 243 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 CITED1Q99966 193 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 PRB4P10163 310 aaPredicted RBP6.82□□□□□ -1.32
CIITA-201ENST00000324288 LRRC75BQ2VPJ9 315 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 PMS2CLQ68D20 193 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 SYT8Q8NBV8 401 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 TMEM91Q6ZNR0 172 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 S4R3C0 116 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 TBX6O95947 436 aaPredicted RBP6.82□□□□□ -1.32
CIITA-201ENST00000324288 AGAP20933 346 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 CRYBB3P26998 211 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 MBD1Q9UIS9 605 aaPredicted RBP6.82□□□□□ -1.32
CIITA-201ENST00000324288 MPC1Q9Y5U8 109 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 ZNF56Q15929 161 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 RGPD3A6NKT7 1758 aaPredicted RBP6.82□□□□□ -1.32
CIITA-201ENST00000324288 EML5Q05BV3 1969 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 NPIPB8E9PQR5 432 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 PPIAL4DF5H284 164 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 NPIPB9F8W1W9 429 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 NPIPB7O75200 414 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 FOXA3P55318 350 aaPredicted RBP6.82□□□□□ -1.32
CIITA-201ENST00000324288 APOBEC4Q8WW27 367 aaKnown RBP6.82□□□□□ -1.32
CIITA-201ENST00000324288 SCN10AQ9Y5Y9 1956 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 TNFSF14O43557 240 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 PRR31Q5SQ13 230 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 ZNF826PQ6ZT77 177 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 SEC11BP0C7V7 166 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 UCP3P55916 312 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 ZNF345Q14585 488 aa6.82□□□□□ -1.32
CIITA-201ENST00000324288 GEMIN7Q9H840 131 aaKnown RBP6.82□□□□□ -1.32
CIITA-201ENST00000324288 CENPVL1A0A0U1RR11 272 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 CTGFP29279 349 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 HBBP68871 147 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 FBLN7Q53RD9 439 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 TMEM78Q5T7P6 136 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 LURAP1LQ8IV03 231 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 TMEM45BQ96B21 275 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 PPP1R3EQ9H7J1 279 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 TRPM7Q96QT4 1865 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 GCHFRP30047 84 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 KCNS1Q96KK3 526 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 PQLC2LA1A4F0 135 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 C2orf68Q2NKX9 166 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 TEPPQ6URK8 271 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 GALNT14Q96FL9 552 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 ZFHX2Q9C0A1 2572 aaPredicted RBP6.81□□□□□ -1.32
CIITA-201ENST00000324288 NCOR2Q9Y618 2525 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 TRA2AQ13595 282 aaKnown RBP eCLIP6.81□□□□□ -1.32
CIITA-201ENST00000324288 GOLT1AQ6ZVE7 132 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 GPBAR1Q8TDU6 330 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 IGHV5-10-1A0A0J9YXX1 117 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 C16orf97H3BN30 126 aa6.81□□□□□ -1.32
CIITA-201ENST00000324288 ANOS1P23352 680 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms