RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 DPRXA6NFQ7 191 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 TNFRSF18Q9Y5U5 241 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 AHRRA9YTQ3 701 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 PAX1P15863 534 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 OR13C6PQ8NH95 151 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 MPV17P39210 176 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 PCSK4Q6UW60 755 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 OR5A1Q8NGJ0 315 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 PARLQ9H300 379 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 A0A1B0GTH9 108 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 CXorf66Q5JRM2 361 aaPredicted RBP13.38□□□□□ -0.27
HCFC1-201ENST00000310441 C1orf185Q5T7R7 199 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 KLK13Q9UKR3 277 aa13.38□□□□□ -0.27
HCFC1-201ENST00000310441 HDHD3Q9BSH5 251 aaPredicted RBP13.37□□□□□ -0.27
HCFC1-201ENST00000310441 TSPAN2O60636 221 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 F11RQ9Y624 299 aaKnown RBP13.37□□□□□ -0.27
HCFC1-201ENST00000310441 TMEM50AO95807 157 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 NIT1Q86X76 327 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 DUX5Q96PT3 197 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 AURKAIP1Q9NWT8 199 aaPredicted RBP13.37□□□□□ -0.27
HCFC1-201ENST00000310441 TNRC6AQ8NDV7 1962 aaKnown RBP13.37□□□□□ -0.27
HCFC1-201ENST00000310441 TRBV20OR9-2A0A075B6H5 130 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 CCL21O00585 134 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 RCC1P18754 421 aaPredicted RBP13.37□□□□□ -0.27
HCFC1-201ENST00000310441 FCGR2BP31994 310 aaPredicted RBP13.37□□□□□ -0.27
HCFC1-201ENST00000310441 GFRA1P56159 465 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 SMIM8Q96KF7 97 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 IGHV3OR15-7A0A075B7D8 119 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 ARF6P62330 175 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 RHOVQ96L33 236 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 NPIPB8E9PQR5 432 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 NPIPB9F8W1W9 429 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 NPIPB7O75200 414 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 PLXNB1O43157 2135 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 IFI6P09912 130 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 DANCRP0C864 163 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 HOXA5P20719 270 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 ZNF418Q8TF45 676 aaPredicted RBP13.37□□□□□ -0.27
HCFC1-201ENST00000310441 MS4A3Q96HJ5 214 aa13.37□□□□□ -0.27
HCFC1-201ENST00000310441 IGHV1OR15-9A0A0B4J2B8 117 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 FTH1P19P0C7X4 201 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 NPPCP23582 126 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 IRF3Q14653 427 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 KIR3DL3Q8N743 410 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 PRR33A8MZF0 331 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 ZFP36L2P47974 494 aaKnown RBP13.36□□□□□ -0.27
HCFC1-201ENST00000310441 SLC17A3O00476 420 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 BGLAPP02818 100 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 COX6B1P14854 86 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 SDHCQ99643 169 aaPredicted RBP13.36□□□□□ -0.27
HCFC1-201ENST00000310441 LINC01559Q495D7 138 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 RGP1Q92546 391 aaPredicted RBP13.36□□□□□ -0.27
HCFC1-201ENST00000310441 BEX4Q9NWD9 120 aaPredicted RBP13.36□□□□□ -0.27
HCFC1-201ENST00000310441 CXCL16Q9H2A7 254 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 UCP2P55851 309 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 DEFB124Q8NES8 71 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 TMEM186Q96B77 213 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 TMEM170BQ5T4T1 132 aa13.36□□□□□ -0.27
HCFC1-201ENST00000310441 ZNF71Q9NQZ8 489 aaPredicted RBP13.36□□□□□ -0.27
HCFC1-201ENST00000310441 COL5A3P25940 1745 aaPredicted RBP13.36□□□□□ -0.27
HCFC1-201ENST00000310441 PRSS41Q7RTY9 318 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 SRSF12Q8WXF0 261 aaKnown RBP13.35□□□□□ -0.27
HCFC1-201ENST00000310441 A0A0G2JLM5 398 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 LINC01549A6NIU2 74 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 LINC00470Q9BZP3 86 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 G6PC2Q9NQR9 355 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 MARVELD3Q96A59 401 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 VN1R4Q7Z5H5 301 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 YAE1D1Q9NRH1 226 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 TRBV7-9A0A0J9YWB2 115 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 PEX11BO96011 259 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 SPEM2Q0P670 501 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 AQP3Q92482 292 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 SDF2L1Q9HCN8 221 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 ADAMTSL1Q8N6G6 1762 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 J3QW42 95 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 NBASA2RRP1 2371 aa13.35□□□□□ -0.27
HCFC1-201ENST00000310441 PGPA6NDG6 321 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 CT62P0C5K7 136 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 UCP3P55916 312 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 UNQ9370/PRO34162Q6UXP9 181 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 KCNS1Q96KK3 526 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 PATE4P0C8F1 98 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 TMEM160Q9NX00 188 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 IGHV5-10-1A0A0J9YXX1 117 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 AMER3Q8N944 861 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 SPANXA1Q9NS26 97 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 REG1BP48304 166 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 HSPE1P61604 102 aaKnown RBP13.34□□□□□ -0.27
HCFC1-201ENST00000310441 FAM74A4Q5TZK3 123 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 TMPRSS3P57727 454 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 CLEC7AQ9BXN2 247 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 ADRA2AP08913 450 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 CISD3P0C7P0 127 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 SSTR5P35346 364 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 DCAF10Q5QP82 559 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 UNQ5815/PRO19632Q6UWF5 114 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 DCTN5Q9BTE1 182 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 COL24A1Q17RW2 1714 aa13.34□□□□□ -0.27
HCFC1-201ENST00000310441 ODAMA1E959 279 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms