RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZAR1Q86SH2 424 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 REPIN1Q9BWE0 567 aaKnown RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 C6orf106Q9H6K1 298 aaPredicted RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 SEPSECSQ9HD40 501 aaKnown RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 ONECUT1Q9UBC0 465 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 FOXS1O43638 330 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 AMY1AP04745 511 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 APELAP0DMC3 54 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 PNLIPP16233 465 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 SUMO2P61956 95 aaKnown RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 VMA21Q3ZAQ7 101 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 C5orf30Q96GV9 206 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 EAF1Q96JC9 268 aaPredicted RBP5.53□□□□□ -1.52
VPS35-201ENST00000299138 SFXN3Q9BWM7 321 aa5.53□□□□□ -1.52
VPS35-201ENST00000299138 CGB1A6NKQ9 187 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 RPL36A-HNRNPH2H7BZ11 118 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 RRHO14718 337 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 ID3Q02535 119 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 SMIM21Q3B7S5 101 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 PERPQ96FX8 193 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 OR2V2Q96R30 315 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 ERRFI1Q9UJM3 462 aaPredicted RBP5.52□□□□□ -1.53
VPS35-201ENST00000299138 ZNF257Q9Y2Q1 563 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 MGAMO43451 1857 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 PSMB11A5LHX3 300 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 NDUFA3O95167 84 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 SPEM2Q0P670 501 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 CBLN3Q6UW01 205 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 Q6ZSR6 202 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 ZPLD1Q8TCW7 415 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.52□□□□□ -1.53
VPS35-201ENST00000299138 GRAMD2BQ96HH9 432 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 A0A096LPE4 126 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 A0A1W2PPZ6 126 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 NPIPB11E5RHQ5 1161 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 H0YL77 283 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 ICOSLGO75144 302 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 ESDP10768 282 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 ST6GAL1P15907 406 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 KRTCAP3Q53RY4 240 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 C9orf50Q5SZB4 431 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 RNF166Q96A37 237 aaPredicted RBP5.52□□□□□ -1.53
VPS35-201ENST00000299138 NAA38Q9BRA0 125 aaKnown RBP5.52□□□□□ -1.53
VPS35-201ENST00000299138 SEMA5BQ9P283 1151 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 TRPM7Q96QT4 1865 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 CHST1O43916 411 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 NCR2O95944 276 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 HPRT1P00492 218 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 PF4V1P10720 104 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 SSTR5P35346 364 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 TGIF1Q15583 401 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 ZNF766Q5HY98 468 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 CXorf67Q86X51 503 aaPredicted RBP5.52□□□□□ -1.53
VPS35-201ENST00000299138 C1orf174Q8IYL3 243 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 OR52M1Q8NGK5 317 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 NEUROG1Q92886 237 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 MGST2Q99735 147 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 IGHV3-43A0A0B4J1X8 118 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 K7ESF4 209 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 IGHV3-43DP0DP04 118 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 ZDHHC23Q8IYP9 409 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 PNKDQ8N490 385 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 NABP2Q9BQ15 211 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 SS18L2Q9UHA2 77 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 LAMTOR2Q9Y2Q5 125 aa5.52□□□□□ -1.53
VPS35-201ENST00000299138 DOCK6Q96HP0 2047 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 A8MWV9 139 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 OR11H12B2RN74 326 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 NPIPB6E9PJ23 425 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 IGFBP7Q16270 282 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 TMEM30BQ3MIR4 351 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 IBA57Q5T440 356 aaKnown RBP5.51□□□□□ -1.53
VPS35-201ENST00000299138 TSPO2Q5TGU0 170 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 HIST3H2BBQ8N257 126 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 OR11H1Q8NG94 326 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 OR11H2Q8NH07 326 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 ZPBPQ9BS86 351 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 MPC1Q9Y5U8 109 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 ATP23Q9Y6H3 246 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 NDUFB4O95168 129 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 CXorf1O96002 111 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 C10orf113Q5VZT2 155 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 RTN4RL2Q86UN3 420 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 LYG1Q8N1E2 194 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 OR4X1Q8NH49 305 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 EDARADDQ8WWZ3 215 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 SRSF8Q9BRL6 282 aaKnown RBP5.51□□□□□ -1.53
VPS35-201ENST00000299138 GP6Q9HCN6 339 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 FAM157AC9JC47 383 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 CD27P26842 260 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 ZNF121P58317 390 aaPredicted RBP5.51□□□□□ -1.53
VPS35-201ENST00000299138 GAGE13Q4V321 117 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 MRPL20Q9BYC9 149 aaKnown RBP5.51□□□□□ -1.53
VPS35-201ENST00000299138 MED29Q9NX70 200 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 PIKFYVEQ9Y2I7 2098 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 PPYP01298 95 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 SAA1P0DJI8 122 aaPredicted RBP5.51□□□□□ -1.53
VPS35-201ENST00000299138 PRDX2P32119 198 aa5.51□□□□□ -1.53
VPS35-201ENST00000299138 MBNL2Q5VZF2 373 aaKnown RBP5.51□□□□□ -1.53
VPS35-201ENST00000299138 FAM222BQ8WU58 562 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms