RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 WFDC5Q8TCV5 224 aa12.06□□□□□ -0.48
CCDC88A-201ENST00000263630 TIMM23BQ5SRD1 257 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 FOXB2Q5VYV0 432 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 FBXW9Q5XUX1 488 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 MARVELD3Q96A59 401 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 DNAJC30Q96LL9 226 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 PRR32B1ATL7 298 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 XAF1Q6GPH4 301 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 ZNF407Q9C0G0 2248 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 LIPT2A6NK58 231 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 DMKNQ6E0U4 476 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 A0A0U1RQV5 110 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 A0A1B0GUT8 65 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 C17orf47Q8NEP4 570 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 OR4D11Q8NGI4 311 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 A0A0G2JLM5 398 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 TOMM40O96008 361 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 OR4X2Q8NGF9 303 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 TRBV5-4A0A0C4DH59 114 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 EDIL3O43854 480 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 ORMDL3Q8N138 153 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 MS4A4AQ96JQ5 239 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 ZGRF1Q86YA3 2104 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 FOXI3A8MTJ6 420 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 CD8AP01732 235 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 WDR82Q6UXN9 313 aa12.05□□□□□ -0.48
CCDC88A-201ENST00000263630 TRGV2A0A075B6R0 118 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 ODAMA1E959 279 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 GUSBP11Q6P575 273 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 MORN3Q6PF18 240 aaPredicted RBP12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 TMEM222Q9H0R3 208 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 VENTXO95231 258 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 NPCDR1Q9BY65 106 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 M0R381 172 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 LAMB2P55268 1798 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 SPEM2Q0P670 501 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 OR10J3Q5JRS4 329 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 KLHDC9Q8NEP7 349 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 ZNF488Q96MN9 340 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 ARFGEF3Q5TH69 2177 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 M0R2P5 195 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 MPZL1O95297 269 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 JPT2Q9H910 190 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 ST6GALNAC2Q9UJ37 374 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 FREM3P0C091 2139 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 LINC01549A6NIU2 74 aa12.04□□□□□ -0.48
CCDC88A-201ENST00000263630 FGF12P61328 243 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 LRRK1Q38SD2 2015 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 CEACAM21Q3KPI0 293 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 ZNF48Q96MX3 618 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 TMEM30AQ9NV96 361 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 HEATR5AQ86XA9 2040 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 TGFAP01135 160 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 P2RY4P51582 365 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 ISG15P05161 165 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 ZNF257Q9Y2Q1 563 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 TRAV9-1A0A075B6T8 112 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 LINC00614P0C842 121 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 MEGF9Q9H1U4 602 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 ZNF585BQ52M93 769 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 CENPWQ5EE01 88 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 APOHP02749 345 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 CRYBB3P26998 211 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 CD69Q07108 199 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 NPIPB11E5RHQ5 1161 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 LHX9Q9NQ69 397 aa12.03□□□□□ -0.48
CCDC88A-201ENST00000263630 A0A1W2PP11 408 aa12.02□□□□□ -0.48
CCDC88A-201ENST00000263630 PATE4P0C8F1 98 aa12.02□□□□□ -0.48
CCDC88A-201ENST00000263630 RBMY1FQ15415 496 aaKnown RBP12.02□□□□□ -0.48
CCDC88A-201ENST00000263630 MAFAQ8NHW3 353 aaPredicted RBP12.02□□□□□ -0.48
CCDC88A-201ENST00000263630 MAGEA5P43359 124 aa12.02□□□□□ -0.48
CCDC88A-201ENST00000263630 HIKESHIQ53FT3 197 aa12.02□□□□□ -0.48
CCDC88A-201ENST00000263630 RND2P52198 227 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 CT55Q8WUE5 264 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 GPR183P32249 361 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 DEFB124Q8NES8 71 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 C14orf144Q96I85 54 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 RREB1Q92766 1687 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 TMEM229AB2RXF0 380 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 OR11H4Q8NGC9 324 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 LAMTOR3Q9UHA4 124 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 V9GYH0 126 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 GBF1Q92538 1859 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 RGPD4Q7Z3J3 1758 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 MPV17P39210 176 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 MIC13Q5XKP0 118 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 PMS2CLQ68D20 193 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 NR2C2APQ86WQ0 139 aa12.02□□□□□ -0.49
CCDC88A-201ENST00000263630 LINC00305Q7Z4B0 112 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 MDKP21741 143 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 TNFRSF9Q07011 255 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 PEMTQ9UBM1 199 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 DOCK1Q14185 1865 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 IGHV5-51A0A0C4DH38 117 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 IGLV3-27P01718 113 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 P2RY6Q15077 328 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 TBR1Q16650 682 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 ITLN2Q8WWU7 325 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 IDI2-AS1Q9NZ38 188 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 IGKV3-20P01619 116 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms