RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CCL5P13501 91 aa20.94■□□□□ 0.94
CLN3-264ENST00000637985 C17orf99Q6UX52 265 aa20.94■□□□□ 0.94
CLN3-264ENST00000637985 KSR2Q6VAB6 950 aa20.94■□□□□ 0.94
CLN3-264ENST00000637985 HELBQ8NG08 1087 aaPredicted RBP20.94■□□□□ 0.94
CLN3-264ENST00000637985 RIPOR2Q9Y4F9 1068 aa20.94■□□□□ 0.94
CLN3-264ENST00000637985 PI4KAP2A4QPH2 592 aa20.93■□□□□ 0.94
CLN3-264ENST00000637985 PI4KAP1Q8N8J0 262 aa20.93■□□□□ 0.94
CLN3-264ENST00000637985 TRIM47Q96LD4 638 aa20.93■□□□□ 0.94
CLN3-264ENST00000637985 PLA2G12BQ9BX93 195 aa20.93■□□□□ 0.94
CLN3-264ENST00000637985 RNF208Q9H0X6 261 aa20.93■□□□□ 0.94
CLN3-264ENST00000637985 TDRD3Q9H7E2 651 aaKnown RBP20.93■□□□□ 0.94
CLN3-264ENST00000637985 ADAMTS8Q9UP79 889 aa20.93■□□□□ 0.94
CLN3-264ENST00000637985 UNC80Q8N2C7 3258 aa20.93■□□□□ 0.94
CLN3-264ENST00000637985 CSF1RP07333 972 aa20.92■□□□□ 0.94
CLN3-264ENST00000637985 HOXD10P28358 340 aa20.92■□□□□ 0.94
CLN3-264ENST00000637985 PSMC4P43686 418 aa20.92■□□□□ 0.94
CLN3-264ENST00000637985 CWF19L2Q2TBE0 894 aaKnown RBP20.92■□□□□ 0.94
CLN3-264ENST00000637985 UBE3BQ7Z3V4 1068 aa20.92■□□□□ 0.94
CLN3-264ENST00000637985 ZNF804AQ7Z570 1209 aa20.92■□□□□ 0.94
CLN3-264ENST00000637985 RAET1EQ8TD07 263 aa20.92■□□□□ 0.94
CLN3-264ENST00000637985 TMEM39BQ9GZU3 492 aa20.92■□□□□ 0.94
CLN3-264ENST00000637985 JAG2Q9Y219 1238 aa20.92■□□□□ 0.94
CLN3-264ENST00000637985 NEURL1BA8MQ27 555 aa20.91■□□□□ 0.94
CLN3-264ENST00000637985 TAF5LO75529 589 aa20.91■□□□□ 0.94
CLN3-264ENST00000637985 FARP2O94887 1054 aaPredicted RBP20.91■□□□□ 0.94
CLN3-264ENST00000637985 OSBPP22059 807 aa20.91■□□□□ 0.94
CLN3-264ENST00000637985 SNAPC2Q13487 334 aa20.91■□□□□ 0.94
CLN3-264ENST00000637985 GPR153Q6NV75 609 aa20.91■□□□□ 0.94
CLN3-264ENST00000637985 ERO1BQ86YB8 467 aa20.91■□□□□ 0.94
CLN3-264ENST00000637985 STAP2Q9UGK3 403 aa20.91■□□□□ 0.94
CLN3-264ENST00000637985 SERPINA10Q9UK55 444 aa20.91■□□□□ 0.94
CLN3-264ENST00000637985 SNCAIPQ9Y6H5 919 aa20.91■□□□□ 0.94
CLN3-264ENST00000637985 ARAP2Q8WZ64 1704 aa20.9■□□□□ 0.94
CLN3-264ENST00000637985 IRF6O14896 467 aa20.9■□□□□ 0.94
CLN3-264ENST00000637985 ECM2O94769 699 aaPredicted RBP20.9■□□□□ 0.94
CLN3-264ENST00000637985 NEXNQ0ZGT2 675 aa20.9■□□□□ 0.94
CLN3-264ENST00000637985 U2AF1L4Q8WU68 220 aaKnown RBP20.9■□□□□ 0.94
CLN3-264ENST00000637985 TCP10L2B9ZVM9 353 aa20.89■□□□□ 0.93
CLN3-264ENST00000637985 EVI5O60447 810 aa20.89■□□□□ 0.93
CLN3-264ENST00000637985 CCDC30Q5VVM6 783 aa20.89■□□□□ 0.93
CLN3-264ENST00000637985 DZIP1LQ8IYY4 767 aaKnown RBP20.89■□□□□ 0.93
CLN3-264ENST00000637985 C8orf58Q8NAV2 365 aa20.89■□□□□ 0.93
CLN3-264ENST00000637985 CPA4Q9UI42 421 aa20.89■□□□□ 0.93
CLN3-264ENST00000637985 FAM205AQ6ZU69 1335 aa20.88■□□□□ 0.93
CLN3-264ENST00000637985 MYPNQ86TC9 1320 aa20.88■□□□□ 0.93
CLN3-264ENST00000637985 FMNL1O95466 1100 aaPredicted RBP20.88■□□□□ 0.93
CLN3-264ENST00000637985 TNNI2P48788 182 aa20.88■□□□□ 0.93
CLN3-264ENST00000637985 UBXN2AP68543 259 aa20.88■□□□□ 0.93
CLN3-264ENST00000637985 TTF2Q9UNY4 1162 aaKnown RBP20.88■□□□□ 0.93
CLN3-264ENST00000637985 ADGRA2Q96PE1 1338 aa20.87■□□□□ 0.93
CLN3-264ENST00000637985 SGPL1O95470 568 aa20.87■□□□□ 0.93
CLN3-264ENST00000637985 CASP7P55210 303 aa20.87■□□□□ 0.93
CLN3-264ENST00000637985 PPIL2Q13356 520 aa20.87■□□□□ 0.93
CLN3-264ENST00000637985 CHMP4AQ9BY43 222 aa20.87■□□□□ 0.93
CLN3-264ENST00000637985 IFT57Q9NWB7 429 aa20.87■□□□□ 0.93
CLN3-264ENST00000637985 BIN2Q9UBW5 565 aaPredicted RBP20.87■□□□□ 0.93
CLN3-264ENST00000637985 STXBP5LQ9Y2K9 1186 aa20.87■□□□□ 0.93
CLN3-264ENST00000637985 A0A1B0GUL6 1792 aa20.87■□□□□ 0.93
CLN3-264ENST00000637985 MFSD14BQ5SR56 506 aa20.86■□□□□ 0.93
CLN3-264ENST00000637985 DEFB123Q8N688 67 aa20.86■□□□□ 0.93
CLN3-264ENST00000637985 ZKSCAN4Q969J2 545 aaPredicted RBP20.86■□□□□ 0.93
CLN3-264ENST00000637985 UNC93B1Q9H1C4 597 aa20.86■□□□□ 0.93
CLN3-264ENST00000637985 ANKRD18BA2A2Z9 1011 aa20.85■□□□□ 0.93
CLN3-264ENST00000637985 BMP8BP34820 402 aa20.85■□□□□ 0.93
CLN3-264ENST00000637985 GCKRQ14397 625 aa20.85■□□□□ 0.93
CLN3-264ENST00000637985 WRNIP1Q96S55 665 aa20.85■□□□□ 0.93
CLN3-264ENST00000637985 COL25A1Q9BXS0 654 aaPredicted RBP20.85■□□□□ 0.93
CLN3-264ENST00000637985 GNAI1P63096 354 aa20.84■□□□□ 0.93
CLN3-264ENST00000637985 PRKCZQ05513 592 aa20.84■□□□□ 0.93
CLN3-264ENST00000637985 ANKRD23Q86SG2 305 aa20.84■□□□□ 0.93
CLN3-264ENST00000637985 SLAIN1Q8ND83 568 aa20.84■□□□□ 0.93
CLN3-264ENST00000637985 GDF15Q99988 308 aa20.84■□□□□ 0.93
CLN3-264ENST00000637985 PDHXO00330 501 aa20.83■□□□□ 0.93
CLN3-264ENST00000637985 CAPN2P17655 700 aa20.83■□□□□ 0.93
CLN3-264ENST00000637985 CRKP46108 304 aa20.83■□□□□ 0.93
CLN3-264ENST00000637985 PPATQ06203 517 aa20.83■□□□□ 0.93
CLN3-264ENST00000637985 Q7L0L9 218 aa20.83■□□□□ 0.93
CLN3-264ENST00000637985 TDRD7Q8NHU6 1098 aaKnown RBP20.83■□□□□ 0.93
CLN3-264ENST00000637985 ALPK3Q96L96 1907 aa20.81■□□□□ 0.92
CLN3-264ENST00000637985 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.81■□□□□ 0.92
CLN3-264ENST00000637985 MTMR10Q9NXD2 777 aa20.81■□□□□ 0.92
CLN3-264ENST00000637985 FCGRTP55899 365 aa20.8■□□□□ 0.92
CLN3-264ENST00000637985 IFIT5Q13325 482 aaKnown RBP20.8■□□□□ 0.92
CLN3-264ENST00000637985 LRIT3Q3SXY7 679 aa20.8■□□□□ 0.92
CLN3-264ENST00000637985 TSPYL6Q8N831 410 aa20.8■□□□□ 0.92
CLN3-264ENST00000637985 GABRQQ9UN88 632 aa20.8■□□□□ 0.92
CLN3-264ENST00000637985 MGAMO43451 1857 aa20.79■□□□□ 0.92
CLN3-264ENST00000637985 APAF1O14727 1248 aa20.79■□□□□ 0.92
CLN3-264ENST00000637985 TFRCP02786 760 aaKnown RBP20.79■□□□□ 0.92
CLN3-264ENST00000637985 BCRP11274 1271 aa20.79■□□□□ 0.92
CLN3-264ENST00000637985 CACNB3P54284 484 aa20.79■□□□□ 0.92
CLN3-264ENST00000637985 CALD1Q05682 793 aaKnown RBP20.79■□□□□ 0.92
CLN3-264ENST00000637985 MOGSQ13724 837 aa20.79■□□□□ 0.92
CLN3-264ENST00000637985 HOOK2Q96ED9 719 aa20.79■□□□□ 0.92
CLN3-264ENST00000637985 KCNH4Q9UQ05 1017 aa20.79■□□□□ 0.92
CLN3-264ENST00000637985 ADCY3O60266 1144 aa20.78■□□□□ 0.92
CLN3-264ENST00000637985 HDLBPQ00341 1268 aaKnown RBP20.78■□□□□ 0.92
CLN3-264ENST00000637985 G2E3Q7L622 706 aa20.78■□□□□ 0.92
CLN3-264ENST00000637985 FAM83AQ86UY5 434 aa20.78■□□□□ 0.92
CLN3-264ENST00000637985 DEFB118Q96PH6 123 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms