RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 UBE2Q2LH0YL09 131 aa7.6□□□□□ -1.19
VPS33B-207ENST00000557470 RAD21O60216 631 aa7.6□□□□□ -1.19
VPS33B-207ENST00000557470 HMGB1P09429 215 aaKnown RBP7.6□□□□□ -1.19
VPS33B-207ENST00000557470 HOXB7P09629 217 aa7.6□□□□□ -1.19
VPS33B-207ENST00000557470 USP17L8P0C7I0 530 aa7.6□□□□□ -1.19
VPS33B-207ENST00000557470 TRIM28Q13263 835 aaKnown RBP7.6□□□□□ -1.19
VPS33B-207ENST00000557470 PKN2Q16513 984 aaKnown RBP7.6□□□□□ -1.19
VPS33B-207ENST00000557470 PRAMEF18Q5VWM3 479 aa7.6□□□□□ -1.19
VPS33B-207ENST00000557470 CDHR5Q9HBB8 845 aa7.6□□□□□ -1.19
VPS33B-207ENST00000557470 MYOZ2Q9NPC6 264 aa7.6□□□□□ -1.19
VPS33B-207ENST00000557470 DBF4Q9UBU7 674 aaPredicted RBP7.6□□□□□ -1.19
VPS33B-207ENST00000557470 HDAC9Q9UKV0 1011 aa7.6□□□□□ -1.19
VPS33B-207ENST00000557470 LAS1LQ9Y4W2 734 aaKnown RBP7.6□□□□□ -1.19
VPS33B-207ENST00000557470 MKI67P46013 3256 aaKnown RBP7.59□□□□□ -1.19
VPS33B-207ENST00000557470 GPR25O00155 361 aa7.59□□□□□ -1.19
VPS33B-207ENST00000557470 BCAMP50895 628 aa7.59□□□□□ -1.19
VPS33B-207ENST00000557470 NBPF9Q3BBW0 867 aa7.59□□□□□ -1.19
VPS33B-207ENST00000557470 CCDC146Q8IYE0 955 aa7.59□□□□□ -1.19
VPS33B-207ENST00000557470 ZBTB38Q8NAP3 1195 aaPredicted RBP7.59□□□□□ -1.19
VPS33B-207ENST00000557470 CCDC85AQ96PX6 553 aaPredicted RBP7.59□□□□□ -1.19
VPS33B-207ENST00000557470 HYPKQ9NX55 129 aa7.59□□□□□ -1.19
VPS33B-207ENST00000557470 FAM198AQ9UFP1 575 aa7.59□□□□□ -1.19
VPS33B-207ENST00000557470 PSME4Q14997 1843 aa7.59□□□□□ -1.19
VPS33B-207ENST00000557470 XDHP47989 1333 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 USP17L3A6NCW0 530 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 USP17L4A6NCW7 530 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 WTIPA6NIX2 430 aaPredicted RBP7.58□□□□□ -1.2
VPS33B-207ENST00000557470 C3orf80F5H4A9 247 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 TM4SF4P48230 202 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 TTLL12Q14166 644 aaPredicted RBP7.58□□□□□ -1.2
VPS33B-207ENST00000557470 CCDC152Q4G0S7 254 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 NOM1Q5C9Z4 860 aaKnown RBP7.58□□□□□ -1.2
VPS33B-207ENST00000557470 DUSP27Q5VZP5 1158 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 FBXO46Q6PJ61 603 aaPredicted RBP7.58□□□□□ -1.2
VPS33B-207ENST00000557470 USP17L1Q7RTZ2 530 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 RIC3Q7Z5B4 369 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 JARID2Q92833 1246 aaPredicted RBP7.58□□□□□ -1.2
VPS33B-207ENST00000557470 ZFRQ96KR1 1074 aaKnown RBP7.58□□□□□ -1.2
VPS33B-207ENST00000557470 MXD3Q9BW11 206 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 R3HDMLQ9H3Y0 253 aa7.58□□□□□ -1.2
VPS33B-207ENST00000557470 WNT10BO00744 389 aa7.57□□□□□ -1.2
VPS33B-207ENST00000557470 PDE8AO60658 829 aa7.57□□□□□ -1.2
VPS33B-207ENST00000557470 EIF5BO60841 1220 aaKnown RBP7.57□□□□□ -1.2
VPS33B-207ENST00000557470 PCCAP05165 728 aaPredicted RBP7.57□□□□□ -1.2
VPS33B-207ENST00000557470 HSP90B1P14625 803 aaKnown RBP7.57□□□□□ -1.2
VPS33B-207ENST00000557470 MLLT3P42568 568 aaPredicted RBP7.57□□□□□ -1.2
VPS33B-207ENST00000557470 PODNQ7Z5L7 613 aa7.57□□□□□ -1.2
VPS33B-207ENST00000557470 LAPTM4BQ86VI4 370 aa7.57□□□□□ -1.2
VPS33B-207ENST00000557470 ANKRD18AQ8IVF6 992 aa7.57□□□□□ -1.2
VPS33B-207ENST00000557470 ANKK1Q8NFD2 765 aa7.57□□□□□ -1.2
VPS33B-207ENST00000557470 CDCA7LQ96GN5 454 aa7.57□□□□□ -1.2
VPS33B-207ENST00000557470 MYD88Q99836 296 aa7.57□□□□□ -1.2
VPS33B-207ENST00000557470 PHAXQ9H814 394 aaKnown RBP7.57□□□□□ -1.2
VPS33B-207ENST00000557470 SEMA3EO15041 775 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 IGSF3O75054 1194 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 FKTNO75072 461 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 SASH1O94885 1247 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 ATP2B4P23634 1241 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 NF2P35240 595 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 PTPN12Q05209 780 aaKnown RBP7.56□□□□□ -1.2
VPS33B-207ENST00000557470 SREBF2Q12772 1141 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 FLIIQ13045 1269 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 PRKG1Q13976 671 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 DACT2Q5SW24 774 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 SMYD5Q6GMV2 418 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 CFHR5Q9BXR6 569 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 KDM4CQ9H3R0 1056 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 MBIPQ9NS73 344 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 ZNF646O15015 1829 aaPredicted RBP7.56□□□□□ -1.2
VPS33B-207ENST00000557470 CENPFP49454 3210 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 MED23Q9ULK4 1368 aa7.56□□□□□ -1.2
VPS33B-207ENST00000557470 SOWAHBA6NEL2 793 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 SMAPO00193 183 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 CTSWP56202 376 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 PRSS12P56730 875 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 RALBP1Q15311 655 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 HABP4Q5JVS0 413 aaKnown RBP7.55□□□□□ -1.2
VPS33B-207ENST00000557470 SPRYD7Q5W111 196 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 ARMC9Q7Z3E5 817 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 TXNRD3Q86VQ6 643 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 CCDC82Q8N4S0 544 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 OGFOD1Q8N543 542 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 CCDC191Q8NCU4 936 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 RUNDC1Q96C34 613 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 GCC1Q96CN9 775 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 CDC5LQ99459 802 aaKnown RBP7.55□□□□□ -1.2
VPS33B-207ENST00000557470 TRAIPQ9BWF2 469 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 CWC25Q9NXE8 425 aaPredicted RBP7.55□□□□□ -1.2
VPS33B-207ENST00000557470 MINPP1Q9UNW1 487 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 FZD1Q9UP38 647 aa7.55□□□□□ -1.2
VPS33B-207ENST00000557470 MYO3BQ8WXR4 1341 aa7.54□□□□□ -1.2
VPS33B-207ENST00000557470 ELL2O00472 640 aaPredicted RBP7.54□□□□□ -1.2
VPS33B-207ENST00000557470 KLRK1P26718 216 aa7.54□□□□□ -1.2
VPS33B-207ENST00000557470 CCT4P50991 539 aaKnown RBP7.54□□□□□ -1.2
VPS33B-207ENST00000557470 LDLRAD1Q5T700 205 aa7.54□□□□□ -1.2
VPS33B-207ENST00000557470 STRIP1Q5VSL9 837 aa7.54□□□□□ -1.2
VPS33B-207ENST00000557470 OTOP1Q7RTM1 612 aa7.54□□□□□ -1.2
VPS33B-207ENST00000557470 PACS2Q86VP3 889 aa7.54□□□□□ -1.2
VPS33B-207ENST00000557470 RGS22Q8NE09 1264 aa7.54□□□□□ -1.2
VPS33B-207ENST00000557470 ZBED3Q96IU2 234 aaPredicted RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms