RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 TTF1Q15361 905 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-218ENST00000555213 PI16Q6UXB8 463 aa13.26□□□□□ -0.29
SHMT2-218ENST00000555213 SLF2Q8IX21 1173 aa13.26□□□□□ -0.29
SHMT2-218ENST00000555213 MYOZ2Q9NPC6 264 aa13.26□□□□□ -0.29
SHMT2-218ENST00000555213 POTECB2RU33 542 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 MYO1BO43795 1136 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 RBM5P52756 815 aaKnown RBP eCLIP13.25□□□□□ -0.29
SHMT2-218ENST00000555213 PDE1AP54750 535 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 HDLBPQ00341 1268 aaKnown RBP13.25□□□□□ -0.29
SHMT2-218ENST00000555213 DLGAP5Q15398 846 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 TBC1D10BQ4KMP7 808 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-218ENST00000555213 ERICH6Q7L0X2 663 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 LDHDQ86WU2 507 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 TEKT1Q969V4 418 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 DNAJC2Q99543 621 aaKnown RBP13.25□□□□□ -0.29
SHMT2-218ENST00000555213 SNRKQ9NRH2 765 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 RAI14Q9P0K7 980 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 LRP2BPQ9P2M1 347 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 SERPINA10Q9UK55 444 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 CLEC11AQ9Y240 323 aa13.25□□□□□ -0.29
SHMT2-218ENST00000555213 SHTN1A0MZ66 631 aa13.24□□□□□ -0.29
SHMT2-218ENST00000555213 KIF3CO14782 793 aa13.24□□□□□ -0.29
SHMT2-218ENST00000555213 GSPT1P15170 499 aaKnown RBP13.24□□□□□ -0.29
SHMT2-218ENST00000555213 HSPA6P17066 643 aa13.24□□□□□ -0.29
SHMT2-218ENST00000555213 PRDX5P30044 214 aa13.24□□□□□ -0.29
SHMT2-218ENST00000555213 ZAP70P43403 619 aa13.24□□□□□ -0.29
SHMT2-218ENST00000555213 GSTO1P78417 241 aa13.24□□□□□ -0.29
SHMT2-218ENST00000555213 RBM26Q5T8P6 1007 aaKnown RBP13.24□□□□□ -0.29
SHMT2-218ENST00000555213 SAMD7Q7Z3H4 446 aa13.24□□□□□ -0.29
SHMT2-218ENST00000555213 GLRX3O76003 335 aaKnown RBP13.23□□□□□ -0.29
SHMT2-218ENST00000555213 TOMM70O94826 608 aa13.23□□□□□ -0.29
SHMT2-218ENST00000555213 CRKP46108 304 aa13.23□□□□□ -0.29
SHMT2-218ENST00000555213 CFAP100Q494V2 611 aa13.23□□□□□ -0.29
SHMT2-218ENST00000555213 TTC22Q5TAA0 569 aa13.23□□□□□ -0.29
SHMT2-218ENST00000555213 TMED8Q6PL24 325 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-218ENST00000555213 SMC1BQ8NDV3 1235 aa13.23□□□□□ -0.29
SHMT2-218ENST00000555213 RBM46Q8TBY0 533 aaKnown RBP13.23□□□□□ -0.29
SHMT2-218ENST00000555213 TRPM4Q8TD43 1214 aa13.23□□□□□ -0.29
SHMT2-218ENST00000555213 ZC3H15Q8WU90 426 aaKnown RBP13.23□□□□□ -0.29
SHMT2-218ENST00000555213 HAUS7Q99871 368 aa13.23□□□□□ -0.29
SHMT2-218ENST00000555213 BOLA2Q9H3K6 86 aa13.23□□□□□ -0.29
SHMT2-218ENST00000555213 AOX1Q06278 1338 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 SPDYE2BA6NHP3 402 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 GOLIM4O00461 696 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 IDH1O75874 414 aaKnown RBP13.22□□□□□ -0.29
SHMT2-218ENST00000555213 SEC24BO95487 1268 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 CYP2E1P05181 493 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-218ENST00000555213 SPDYE6P0CI01 402 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 MAP3K12Q12852 859 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 BMP2KLQ5H9B9 411 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 CHADLQ6NUI6 762 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 TBC1D9Q6ZT07 1266 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 MTMR14Q8NCE2 650 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 NOL10Q9BSC4 688 aaKnown RBP13.22□□□□□ -0.29
SHMT2-218ENST00000555213 MRIQ9BWK5 157 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.22□□□□□ -0.29
SHMT2-218ENST00000555213 PAG1Q9NWQ8 432 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 MAST2Q6P0Q8 1798 aa13.22□□□□□ -0.29
SHMT2-218ENST00000555213 LDHCP07864 332 aa13.21□□□□□ -0.29
SHMT2-218ENST00000555213 MECOMQ03112 1051 aa13.21□□□□□ -0.29
SHMT2-218ENST00000555213 GRIK5Q16478 980 aa13.21□□□□□ -0.29
SHMT2-218ENST00000555213 TSHZ3Q63HK5 1081 aa13.21□□□□□ -0.29
SHMT2-218ENST00000555213 HHIPL2Q6UWX4 724 aa13.21□□□□□ -0.29
SHMT2-218ENST00000555213 PI4K2BQ8TCG2 481 aa13.21□□□□□ -0.29
SHMT2-218ENST00000555213 DCPSQ96C86 337 aaKnown RBP13.21□□□□□ -0.29
SHMT2-218ENST00000555213 ZDHHC15Q96MV8 337 aa13.21□□□□□ -0.29
SHMT2-218ENST00000555213 GGA3Q9NZ52 723 aa13.21□□□□□ -0.29
SHMT2-218ENST00000555213 TMOD2Q9NZR1 351 aa13.21□□□□□ -0.29
SHMT2-218ENST00000555213 WNT10BO00744 389 aa13.2□□□□□ -0.3
SHMT2-218ENST00000555213 EGFRP00533 1210 aa13.2□□□□□ -0.3
SHMT2-218ENST00000555213 DIXDC1Q155Q3 683 aa13.2□□□□□ -0.3
SHMT2-218ENST00000555213 LRRFIP1Q32MZ4 808 aaKnown RBP13.2□□□□□ -0.3
SHMT2-218ENST00000555213 NAA16Q6N069 864 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-218ENST00000555213 APOBEC3FQ8IUX4 373 aaKnown RBP13.2□□□□□ -0.3
SHMT2-218ENST00000555213 SULF1Q8IWU6 871 aa13.2□□□□□ -0.3
SHMT2-218ENST00000555213 PIH1D3Q9NQM4 214 aaKnown RBP13.2□□□□□ -0.3
SHMT2-218ENST00000555213 NDUFB9Q9Y6M9 179 aa13.2□□□□□ -0.3
SHMT2-218ENST00000555213 ADAMTSL1Q8N6G6 1762 aa13.2□□□□□ -0.3
SHMT2-218ENST00000555213 MROH7-TTC4A0A0A0MT08 1334 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 PITPNM2Q9BZ72 1349 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 POTEIP0CG38 1075 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 POTEJP0CG39 1038 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 SDSP20132 328 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 HIRAP54198 1017 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-218ENST00000555213 FSTL1Q12841 308 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 TNFAIP1Q13829 316 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 ANGEL2Q5VTE6 544 aaKnown RBP13.19□□□□□ -0.3
SHMT2-218ENST00000555213 ZSCAN25Q6NSZ9 544 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 NSUN4Q96CB9 384 aaKnown RBP13.19□□□□□ -0.3
SHMT2-218ENST00000555213 RBM19Q9Y4C8 960 aaKnown RBP13.19□□□□□ -0.3
SHMT2-218ENST00000555213 DAGLAQ9Y4D2 1042 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 AKAP11Q9UKA4 1901 aa13.19□□□□□ -0.3
SHMT2-218ENST00000555213 GAKO14976 1311 aa13.18□□□□□ -0.3
SHMT2-218ENST00000555213 BAG3O95817 575 aa13.18□□□□□ -0.3
SHMT2-218ENST00000555213 NBPF9Q3BBW0 867 aa13.18□□□□□ -0.3
SHMT2-218ENST00000555213 MAP1SQ66K74 1059 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-218ENST00000555213 KRT26Q7Z3Y9 468 aa13.18□□□□□ -0.3
SHMT2-218ENST00000555213 CERS3Q8IU89 383 aa13.18□□□□□ -0.3
SHMT2-218ENST00000555213 ZBED3Q96IU2 234 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-218ENST00000555213 ANTXR1Q9H6X2 564 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms