RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 MARCH10Q8NA82 808 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-239ENST00000545694 ZBTB38Q8NAP3 1195 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-239ENST00000545694 IL17RAQ96F46 866 aa7.52□□□□□ -1.21
SYNE1-239ENST00000545694 USP26Q9BXU7 913 aa7.52□□□□□ -1.21
SYNE1-239ENST00000545694 COL5A3P25940 1745 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-239ENST00000545694 MYH14Q7Z406 1995 aaKnown RBP7.51□□□□□ -1.21
SYNE1-239ENST00000545694 CTHP32929 405 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 IL15P40933 162 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-239ENST00000545694 RFX5P48382 616 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-239ENST00000545694 MCM2P49736 904 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 EIF5P55010 431 aaKnown RBP7.51□□□□□ -1.21
SYNE1-239ENST00000545694 PTPN12Q05209 780 aaKnown RBP7.51□□□□□ -1.21
SYNE1-239ENST00000545694 AMHR2Q16671 573 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 PARP10Q53GL7 1025 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 CLEC4GQ6UXB4 293 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 ZNF511Q8NB15 262 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 PI4K2BQ8TCG2 481 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 OTUD7AQ8TE49 926 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-239ENST00000545694 ZC3H15Q8WU90 426 aaKnown RBP7.51□□□□□ -1.21
SYNE1-239ENST00000545694 SYTL4Q96C24 671 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-239ENST00000545694 EVI5LQ96CN4 794 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 TBC1D2Q9BYX2 928 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 IL1RAPL2Q9NP60 686 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 RAD50Q92878 1312 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 NHSQ6T4R5 1651 aa7.51□□□□□ -1.21
SYNE1-239ENST00000545694 PALLDQ8WX93 1383 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 LOC102724428A0A0B4J2F2 783 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 ATP5J2-PTCD1G3V325 749 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 SASH1O94885 1247 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 CHMLP26374 656 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 SIK1P57059 783 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 FOXO4P98177 505 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 LRRFIP1Q32MZ4 808 aaKnown RBP7.5□□□□□ -1.21
SYNE1-239ENST00000545694 AACSQ86V21 672 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.5□□□□□ -1.21
SYNE1-239ENST00000545694 C8orf37Q96NL8 207 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 ESYT1Q9BSJ8 1104 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 CCDC87Q9NVE4 849 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 NXF1Q9UBU9 619 aaKnown RBP7.5□□□□□ -1.21
SYNE1-239ENST00000545694 USP21Q9UK80 565 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 AKAP2Q9Y2D5 859 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 ZNF652Q9Y2D9 606 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 SBF2Q86WG5 1849 aa7.5□□□□□ -1.21
SYNE1-239ENST00000545694 ABCC12Q96J65 1359 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 LAMB2P55268 1798 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 BCORQ6W2J9 1755 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 EYA2O00167 538 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 CSF1RP07333 972 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 ATP5JP18859 108 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 CCDC57Q2TAC2 916 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 EPHA10Q5JZY3 1008 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 LMBR1LQ6UX01 489 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 KIAA1211Q6ZU35 1233 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 DZIP3Q86Y13 1208 aaKnown RBP7.49□□□□□ -1.21
SYNE1-239ENST00000545694 SLC16A10Q8TF71 515 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 RILPL2Q969X0 211 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 ZFP42Q96MM3 310 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 SLC4A9Q96Q91 983 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 ZBTB3Q9H5J0 574 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 TRPC5Q9UL62 973 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-239ENST00000545694 CNTNAP4Q9C0A0 1308 aa7.49□□□□□ -1.21
SYNE1-239ENST00000545694 BTAF1O14981 1849 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 SPDYE5A6NIY4 337 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 LY75O60449 1722 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 ATRNO75882 1429 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 VARSP26640 1264 aaKnown RBP7.48□□□□□ -1.21
SYNE1-239ENST00000545694 GMPRP36959 345 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 CRKLP46109 303 aaKnown RBP7.48□□□□□ -1.21
SYNE1-239ENST00000545694 PIP4K2AP48426 406 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-239ENST00000545694 IFIT5Q13325 482 aaKnown RBP7.48□□□□□ -1.21
SYNE1-239ENST00000545694 NNTQ13423 1086 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 TNNI3KQ59H18 835 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 MEX3CQ5U5Q3 659 aaKnown RBP7.48□□□□□ -1.21
SYNE1-239ENST00000545694 DESI1Q6ICB0 168 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 RSBN1LQ6PCB5 846 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-239ENST00000545694 NLRP10Q86W26 655 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 ZNF34Q8IZ26 560 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 GJD4Q96KN9 370 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-239ENST00000545694 SNRKQ9NRH2 765 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 DIAPH3Q9NSV4 1193 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 PA2G4Q9UQ80 394 aaKnown RBP7.48□□□□□ -1.21
SYNE1-239ENST00000545694 ZBTB1Q9Y2K1 713 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 FPGT-TNNI3KV9GXZ4 949 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 TAF1LQ8IZX4 1826 aa7.48□□□□□ -1.21
SYNE1-239ENST00000545694 RTL9Q8NET4 1388 aa7.47□□□□□ -1.21
SYNE1-239ENST00000545694 CFAP99D6REC4 459 aa7.47□□□□□ -1.21
SYNE1-239ENST00000545694 SGSM2O43147 1006 aa7.47□□□□□ -1.21
SYNE1-239ENST00000545694 PDE8AO60658 829 aa7.47□□□□□ -1.21
SYNE1-239ENST00000545694 RTL5Q5HYW3 569 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-239ENST00000545694 INTS5Q6P9B9 1019 aaKnown RBP7.47□□□□□ -1.21
SYNE1-239ENST00000545694 LYPD8Q6UX82 237 aa7.47□□□□□ -1.21
SYNE1-239ENST00000545694 EAF2Q96CJ1 260 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-239ENST00000545694 KIF2CQ99661 725 aa7.47□□□□□ -1.21
SYNE1-239ENST00000545694 CEP126Q9P2H0 1117 aa7.47□□□□□ -1.21
SYNE1-239ENST00000545694 MYH7P12883 1935 aa7.46□□□□□ -1.21
SYNE1-239ENST00000545694 ANKRD18BA2A2Z9 1011 aa7.46□□□□□ -1.22
SYNE1-239ENST00000545694 K7ELQ4 463 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-239ENST00000545694 CTSWP56202 376 aa7.46□□□□□ -1.22
SYNE1-239ENST00000545694 CSPP1Q1MSJ5 1256 aa7.46□□□□□ -1.22
SYNE1-239ENST00000545694 ATG9AQ7Z3C6 839 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms