RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 ARSIQ5FYB1 569 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 NBPF10Q6P3W6 841 aaKnown RBP4.33□□□□□ -1.72
MCF2-210ENST00000536274 PLEKHM2Q8IWE5 1019 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 PLPP6Q8IY26 295 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 CTCFLQ8NI51 663 aaPredicted RBP4.33□□□□□ -1.72
MCF2-210ENST00000536274 GDAP1L1Q96MZ0 367 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 FUT8Q9BYC5 575 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 UBXN6Q9BZV1 441 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 CENPHQ9H3R5 247 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 TFIP11Q9UBB9 837 aaKnown RBP4.33□□□□□ -1.72
MCF2-210ENST00000536274 KIF13BQ9NQT8 1826 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 EXOC5O00471 708 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 SSBP05455 408 aaKnown RBP eCLIP4.33□□□□□ -1.72
MCF2-210ENST00000536274 E4F1Q66K89 784 aaPredicted RBP4.33□□□□□ -1.72
MCF2-210ENST00000536274 ATF7IPQ6VMQ6 1270 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 PLA2G4DQ86XP0 818 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 RIN2Q8WYP3 895 aaPredicted RBP4.33□□□□□ -1.72
MCF2-210ENST00000536274 ORAI2Q96SN7 254 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 CEP89Q96ST8 783 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 DDX19BQ9UMR2 479 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 SAMM50Q9Y512 469 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 PPIP5K1Q6PFW1 1433 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 KLHL33A6NCF5 533 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 A1BGP04217 495 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 TPM3P06753 285 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 CCDC192P0DO97 292 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 ELF1P32519 619 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 CCT5P48643 541 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 GNAI1P63096 354 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 CNNM3Q8NE01 707 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 FAM200AQ8TCP9 573 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 RBM33Q96EV2 1170 aaKnown RBP4.32□□□□□ -1.72
MCF2-210ENST00000536274 PPP1R13BQ96KQ4 1090 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 PARD6BQ9BYG5 372 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 C10orf71Q711Q0 1435 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 ANKRD26Q9UPS8 1709 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 CCDC196A0A1B0GTZ2 297 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 VPS37CA5D8V6 355 aaPredicted RBP4.32□□□□□ -1.72
MCF2-210ENST00000536274 C11orf91Q3C1V1 193 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 CCDC93Q567U6 631 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 C11orf57Q6ZUT1 292 aaPredicted RBP4.32□□□□□ -1.72
MCF2-210ENST00000536274 CCDC102AQ96A19 550 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 EXOC4Q96A65 974 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 PUS7Q96PZ0 661 aaKnown RBP4.32□□□□□ -1.72
MCF2-210ENST00000536274 DACT1Q9NYF0 836 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 RPAP1Q9BWH6 1393 aaPredicted RBP4.32□□□□□ -1.72
MCF2-210ENST00000536274 TUBGCP6Q96RT7 1819 aa4.32□□□□□ -1.72
MCF2-210ENST00000536274 PPP1R12BO60237 982 aaPredicted RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 LARGE1O95461 756 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 FAM163BP0C2L3 166 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 ZNF165P49910 485 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 NAP1L1P55209 391 aaKnown RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 UBE2HP62256 183 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 E2F5Q15329 346 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 NBPF9Q3BBW0 867 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 TMEM92Q6UXU6 159 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 CREBRFQ8IUR6 639 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 ZNF483Q8TF39 744 aaPredicted RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 TATDN2Q93075 761 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 IL25Q9H293 177 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 GNL3LQ9NVN8 582 aaKnown RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 SHANK3Q9BYB0 1731 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 USP31Q70CQ4 1352 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 ARHGAP33O14559 1287 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 MYBL2P10244 700 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 SYT1P21579 422 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 LONRF2Q1L5Z9 754 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 ESCO1Q5FWF5 840 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 C1QTNF12Q5T7M4 302 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 NBPF14Q5TI25 921 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 NBPF5PQ86XG9 351 aaPredicted RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 CEP57Q86XR8 500 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 ARL10Q8N8L6 244 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 FMNL2Q96PY5 1086 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 PRAM1Q96QH2 718 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 ARGLU1Q9NWB6 273 aaPredicted RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 CPSF2Q9P2I0 782 aaKnown RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 PUF60Q9UHX1 559 aaKnown RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 CAPN7Q9Y6W3 813 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 TADA3O75528 432 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 CSB-PGBD3P0DP91 1061 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 TMF1P82094 1093 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 SF3A1Q15459 793 aaKnown RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 KRT24Q2M2I5 525 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 MYSM1Q5VVJ2 828 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 NBPF11Q86T75 865 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 ZKSCAN4Q969J2 545 aaPredicted RBP4.31□□□□□ -1.72
MCF2-210ENST00000536274 TERF2IPQ9NYB0 399 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 RTEL1Q9NZ71 1219 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 ADGRF5Q8IZF2 1346 aa4.31□□□□□ -1.72
MCF2-210ENST00000536274 BTAF1O14981 1849 aa4.3□□□□□ -1.72
MCF2-210ENST00000536274 PPFIA3O75145 1194 aa4.3□□□□□ -1.72
MCF2-210ENST00000536274 NR1I2O75469 434 aa4.3□□□□□ -1.72
MCF2-210ENST00000536274 MAP4K4O95819 1239 aaPredicted RBP4.3□□□□□ -1.72
MCF2-210ENST00000536274 PDHBP11177 359 aa4.3□□□□□ -1.72
MCF2-210ENST00000536274 GCKP35557 465 aa4.3□□□□□ -1.72
MCF2-210ENST00000536274 CPSF1Q10570 1443 aaKnown RBP4.3□□□□□ -1.72
MCF2-210ENST00000536274 COL9A3Q14050 684 aaPredicted RBP4.3□□□□□ -1.72
MCF2-210ENST00000536274 MAP3K11Q16584 847 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms