RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 SALL3Q9BXA9 1300 aa17.11■□□□□ 0.33
USF1-209ENST00000529476 MYO5AQ9Y4I1 1855 aaKnown RBP17.11■□□□□ 0.33
USF1-209ENST00000529476 USP17L8P0C7I0 530 aa17.1■□□□□ 0.33
USF1-209ENST00000529476 ATP5JP18859 108 aa17.1■□□□□ 0.33
USF1-209ENST00000529476 MX1P20591 662 aa17.1■□□□□ 0.33
USF1-209ENST00000529476 ZAP70P43403 619 aa17.1■□□□□ 0.33
USF1-209ENST00000529476 TBC1D9Q6ZT07 1266 aa17.1■□□□□ 0.33
USF1-209ENST00000529476 GPATCH3Q96I76 525 aa17.1■□□□□ 0.33
USF1-209ENST00000529476 HACL1Q9UJ83 578 aa17.1■□□□□ 0.33
USF1-209ENST00000529476 SALL1Q9NSC2 1324 aa17.1■□□□□ 0.33
USF1-209ENST00000529476 IQCA1LA6NCM1 817 aa17.09■□□□□ 0.33
USF1-209ENST00000529476 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.09■□□□□ 0.33
USF1-209ENST00000529476 BOLA2Q9H3K6 86 aa17.09■□□□□ 0.33
USF1-209ENST00000529476 ABCF2Q9UG63 623 aa17.09■□□□□ 0.33
USF1-209ENST00000529476 ADAMTSL1Q8N6G6 1762 aa17.09■□□□□ 0.33
USF1-209ENST00000529476 TTC41PQ6P2S7 1318 aa17.08■□□□□ 0.32
USF1-209ENST00000529476 CYP2E1P05181 493 aaPredicted RBP17.08■□□□□ 0.32
USF1-209ENST00000529476 HSPA8P11142 646 aaKnown RBP17.08■□□□□ 0.32
USF1-209ENST00000529476 PRDX5P30044 214 aa17.08■□□□□ 0.32
USF1-209ENST00000529476 EPHX2P34913 555 aa17.08■□□□□ 0.32
USF1-209ENST00000529476 ZNF280AP59817 542 aaPredicted RBP17.08■□□□□ 0.32
USF1-209ENST00000529476 SAMD7Q7Z3H4 446 aa17.08■□□□□ 0.32
USF1-209ENST00000529476 DNAJC2Q99543 621 aaKnown RBP17.08■□□□□ 0.32
USF1-209ENST00000529476 TAF1DQ9H5J8 278 aaPredicted RBP17.08■□□□□ 0.32
USF1-209ENST00000529476 TTF2Q9UNY4 1162 aaKnown RBP17.08■□□□□ 0.32
USF1-209ENST00000529476 H7C1D1 291 aa17.07■□□□□ 0.32
USF1-209ENST00000529476 EGFRP00533 1210 aa17.07■□□□□ 0.32
USF1-209ENST00000529476 PDE4AP27815 886 aa17.07■□□□□ 0.32
USF1-209ENST00000529476 PDE1AP54750 535 aa17.07■□□□□ 0.32
USF1-209ENST00000529476 OGFOD1Q8N543 542 aa17.07■□□□□ 0.32
USF1-209ENST00000529476 ZGPATQ8N5A5 531 aaKnown RBP17.07■□□□□ 0.32
USF1-209ENST00000529476 PI4K2BQ8TCG2 481 aa17.07■□□□□ 0.32
USF1-209ENST00000529476 ANTXR1Q9H6X2 564 aa17.07■□□□□ 0.32
USF1-209ENST00000529476 PIH1D3Q9NQM4 214 aaKnown RBP17.07■□□□□ 0.32
USF1-209ENST00000529476 STAP2Q9UGK3 403 aa17.07■□□□□ 0.32
USF1-209ENST00000529476 DOCK2Q92608 1830 aa17.06■□□□□ 0.32
USF1-209ENST00000529476 LDHBP07195 334 aaKnown RBP17.06■□□□□ 0.32
USF1-209ENST00000529476 TBC1D10BQ4KMP7 808 aaPredicted RBP17.06■□□□□ 0.32
USF1-209ENST00000529476 RBM26Q5T8P6 1007 aaKnown RBP17.06■□□□□ 0.32
USF1-209ENST00000529476 PLEKHM2Q8IWE5 1019 aa17.06■□□□□ 0.32
USF1-209ENST00000529476 TRPM4Q8TD43 1214 aa17.06■□□□□ 0.32
USF1-209ENST00000529476 EDC3Q96F86 508 aaKnown RBP17.06■□□□□ 0.32
USF1-209ENST00000529476 HAUS7Q99871 368 aa17.06■□□□□ 0.32
USF1-209ENST00000529476 ADARB2Q9NS39 739 aaKnown RBP17.06■□□□□ 0.32
USF1-209ENST00000529476 HDAC9Q9UKV0 1011 aa17.06■□□□□ 0.32
USF1-209ENST00000529476 SUGT1Q9Y2Z0 365 aa17.06■□□□□ 0.32
USF1-209ENST00000529476 TMEM88BA6NKF7 163 aa17.05■□□□□ 0.32
USF1-209ENST00000529476 GOLIM4O00461 696 aa17.05■□□□□ 0.32
USF1-209ENST00000529476 ERC2O15083 957 aa17.05■□□□□ 0.32
USF1-209ENST00000529476 ITGBL1O95965 494 aaPredicted RBP17.05■□□□□ 0.32
USF1-209ENST00000529476 MLLT1Q03111 559 aaPredicted RBP17.05■□□□□ 0.32
USF1-209ENST00000529476 SPTY2D1Q68D10 685 aaPredicted RBP17.05■□□□□ 0.32
USF1-209ENST00000529476 ERICH6Q7L0X2 663 aa17.05■□□□□ 0.32
USF1-209ENST00000529476 MYOZ2Q9NPC6 264 aa17.05■□□□□ 0.32
USF1-209ENST00000529476 LRP2BPQ9P2M1 347 aa17.05■□□□□ 0.32
USF1-209ENST00000529476 PCDHAC2Q9Y5I4 1007 aa17.05■□□□□ 0.32
USF1-209ENST00000529476 MAST2Q6P0Q8 1798 aa17.05■□□□□ 0.32
USF1-209ENST00000529476 MYH2Q9UKX2 1941 aa17.04■□□□□ 0.32
USF1-209ENST00000529476 GLRX3O76003 335 aaKnown RBP17.04■□□□□ 0.32
USF1-209ENST00000529476 HIRAP54198 1017 aaPredicted RBP17.04■□□□□ 0.32
USF1-209ENST00000529476 KIF4BQ2VIQ3 1234 aa17.04■□□□□ 0.32
USF1-209ENST00000529476 EAPPQ56P03 285 aaPredicted RBP17.04■□□□□ 0.32
USF1-209ENST00000529476 SKAP1Q86WV1 359 aa17.04■□□□□ 0.32
USF1-209ENST00000529476 DZIP1Q86YF9 867 aaKnown RBP17.04■□□□□ 0.32
USF1-209ENST00000529476 PAG1Q9NWQ8 432 aa17.04■□□□□ 0.32
USF1-209ENST00000529476 RAI14Q9P0K7 980 aa17.04■□□□□ 0.32
USF1-209ENST00000529476 MAST3O60307 1309 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 MAP4K4O95819 1239 aaPredicted RBP17.03■□□□□ 0.32
USF1-209ENST00000529476 CRKP46108 304 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 RGS19P49795 217 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 MMP14P50281 582 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 RBM5P52756 815 aaKnown RBP eCLIP17.03■□□□□ 0.32
USF1-209ENST00000529476 MECOMQ03112 1051 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 DIXDC1Q155Q3 683 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 CFAP100Q494V2 611 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 USP50Q70EL3 339 aaPredicted RBP17.03■□□□□ 0.32
USF1-209ENST00000529476 LDHDQ86WU2 507 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 ZNF384Q8TF68 577 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 SERPINA10Q9UK55 444 aa17.03■□□□□ 0.32
USF1-209ENST00000529476 AOX1Q06278 1338 aa17.02■□□□□ 0.32
USF1-209ENST00000529476 CCDC85CA6NKD9 419 aa17.02■□□□□ 0.32
USF1-209ENST00000529476 IDH1O75874 414 aaKnown RBP17.02■□□□□ 0.32
USF1-209ENST00000529476 HDLBPQ00341 1268 aaKnown RBP17.02■□□□□ 0.32
USF1-209ENST00000529476 TTF1Q15361 905 aaPredicted RBP17.02■□□□□ 0.32
USF1-209ENST00000529476 DLGAP5Q15398 846 aa17.02■□□□□ 0.32
USF1-209ENST00000529476 PNMA8AQ86V59 439 aaPredicted RBP17.02■□□□□ 0.32
USF1-209ENST00000529476 TEKT1Q969V4 418 aa17.02■□□□□ 0.32
USF1-209ENST00000529476 NSUN4Q96CB9 384 aaKnown RBP17.02■□□□□ 0.32
USF1-209ENST00000529476 OSBPL3Q9H4L5 887 aa17.02■□□□□ 0.32
USF1-209ENST00000529476 MYH7P12883 1935 aa17.02■□□□□ 0.31
USF1-209ENST00000529476 ASTN2O75129 1339 aaPredicted RBP17.01■□□□□ 0.31
USF1-209ENST00000529476 ECM29Q5VYK3 1845 aa17.01■□□□□ 0.31
USF1-209ENST00000529476 NBPF9Q3BBW0 867 aa17.01■□□□□ 0.31
USF1-209ENST00000529476 ZBED3Q96IU2 234 aaPredicted RBP17.01■□□□□ 0.31
USF1-209ENST00000529476 MRIQ9BWK5 157 aa17.01■□□□□ 0.31
USF1-209ENST00000529476 SPDYE2BA6NHP3 402 aa17■□□□□ 0.31
USF1-209ENST00000529476 RASSF10A6NK89 507 aa17■□□□□ 0.31
USF1-209ENST00000529476 WNT10BO00744 389 aa17■□□□□ 0.31
USF1-209ENST00000529476 SPDYE6P0CI01 402 aa17■□□□□ 0.31
USF1-209ENST00000529476 MAP3K12Q12852 859 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms