RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ANKS3Q6ZW76 656 aa11□□□□□ -0.65
LSM1-202ENST00000520286 SULF2Q8IWU5 870 aa11□□□□□ -0.65
LSM1-202ENST00000520286 FBXO27Q8NI29 283 aa11□□□□□ -0.65
LSM1-202ENST00000520286 SRRTQ9BXP5 876 aaKnown RBP11□□□□□ -0.65
LSM1-202ENST00000520286 LRRC3Q9BY71 257 aa11□□□□□ -0.65
LSM1-202ENST00000520286 KLF15Q9UIH9 416 aa11□□□□□ -0.65
LSM1-202ENST00000520286 ADARB2-AS1A8MUL3 147 aa10.99□□□□□ -0.65
LSM1-202ENST00000520286 C11orf95C9JLR9 678 aaPredicted RBP10.99□□□□□ -0.65
LSM1-202ENST00000520286 ARAFP10398 606 aa10.99□□□□□ -0.65
LSM1-202ENST00000520286 ADH6P28332 368 aa10.99□□□□□ -0.65
LSM1-202ENST00000520286 SEPT6Q14141 434 aa10.99□□□□□ -0.65
LSM1-202ENST00000520286 LRRC14Q15048 493 aa10.99□□□□□ -0.65
LSM1-202ENST00000520286 NFE2L2Q16236 605 aa10.99□□□□□ -0.65
LSM1-202ENST00000520286 ANAPC16Q96DE5 110 aa10.99□□□□□ -0.65
LSM1-202ENST00000520286 LPIN3Q9BQK8 851 aa10.99□□□□□ -0.65
LSM1-202ENST00000520286 FRRS1LQ9P0K9 344 aa10.99□□□□□ -0.65
LSM1-202ENST00000520286 ESRRAP11474 423 aaPredicted RBP10.98□□□□□ -0.65
LSM1-202ENST00000520286 ARNTP27540 789 aa10.98□□□□□ -0.65
LSM1-202ENST00000520286 SERINC3Q13530 473 aa10.98□□□□□ -0.65
LSM1-202ENST00000520286 MPP2Q14168 576 aa10.98□□□□□ -0.65
LSM1-202ENST00000520286 DIEXFQ68CQ4 756 aaKnown RBP10.98□□□□□ -0.65
LSM1-202ENST00000520286 LLGL2Q6P1M3 1020 aa10.98□□□□□ -0.65
LSM1-202ENST00000520286 CCDC81Q6ZN84 652 aa10.98□□□□□ -0.65
LSM1-202ENST00000520286 STK35Q8TDR2 534 aa10.98□□□□□ -0.65
LSM1-202ENST00000520286 EMILIN2Q9BXX0 1053 aa10.98□□□□□ -0.65
LSM1-202ENST00000520286 CBX8Q9HC52 389 aa10.98□□□□□ -0.65
LSM1-202ENST00000520286 SH2B1Q9NRF2 756 aaPredicted RBP10.98□□□□□ -0.65
LSM1-202ENST00000520286 PPT2Q9UMR5 302 aa10.98□□□□□ -0.65
LSM1-202ENST00000520286 CDK11AQ9UQ88 783 aaPredicted RBP10.98□□□□□ -0.65
LSM1-202ENST00000520286 FAM221AA4D161 298 aa10.97□□□□□ -0.65
LSM1-202ENST00000520286 K7ELQ4 463 aaPredicted RBP10.97□□□□□ -0.65
LSM1-202ENST00000520286 CWF19L2Q2TBE0 894 aaKnown RBP10.97□□□□□ -0.65
LSM1-202ENST00000520286 MRFAP1L1Q96HT8 127 aa10.97□□□□□ -0.65
LSM1-202ENST00000520286 TRIM55Q9BYV6 548 aa10.97□□□□□ -0.65
LSM1-202ENST00000520286 CDC27P30260 824 aa10.96□□□□□ -0.65
LSM1-202ENST00000520286 MCM4P33991 863 aa10.96□□□□□ -0.65
LSM1-202ENST00000520286 IKBKEQ14164 716 aa10.96□□□□□ -0.65
LSM1-202ENST00000520286 GDF6Q6KF10 455 aaPredicted RBP10.96□□□□□ -0.65
LSM1-202ENST00000520286 ZNF746Q6NUN9 644 aaPredicted RBP10.96□□□□□ -0.65
LSM1-202ENST00000520286 GRIN3AQ8TCU5 1115 aa10.96□□□□□ -0.65
LSM1-202ENST00000520286 DDX54Q8TDD1 881 aaKnown RBP10.96□□□□□ -0.65
LSM1-202ENST00000520286 HNRNPLLQ8WVV9 542 aaKnown RBP10.96□□□□□ -0.65
LSM1-202ENST00000520286 SHDQ96IW2 340 aa10.96□□□□□ -0.65
LSM1-202ENST00000520286 MDFIQ99750 246 aa10.96□□□□□ -0.65
LSM1-202ENST00000520286 SIRPGQ9P1W8 387 aa10.96□□□□□ -0.65
LSM1-202ENST00000520286 PRKAG3Q9UGI9 489 aa10.96□□□□□ -0.65
LSM1-202ENST00000520286 R3HCC1Q9Y3T6 440 aaKnown RBP10.96□□□□□ -0.65
LSM1-202ENST00000520286 TBX22Q9Y458 520 aa10.96□□□□□ -0.65
LSM1-202ENST00000520286 KLF4O43474 513 aa10.95□□□□□ -0.66
LSM1-202ENST00000520286 CILPO75339 1184 aa10.95□□□□□ -0.66
LSM1-202ENST00000520286 CABP4P57796 275 aa10.95□□□□□ -0.66
LSM1-202ENST00000520286 GAS6Q14393 721 aa10.95□□□□□ -0.66
LSM1-202ENST00000520286 PSAPL1Q6NUJ1 521 aa10.95□□□□□ -0.66
LSM1-202ENST00000520286 FCHSD1Q86WN1 690 aa10.95□□□□□ -0.66
LSM1-202ENST00000520286 TTC9Q92623 222 aa10.95□□□□□ -0.66
LSM1-202ENST00000520286 MKL1Q969V6 931 aa10.95□□□□□ -0.66
LSM1-202ENST00000520286 NSFL1CQ9UNZ2 370 aaKnown RBP10.95□□□□□ -0.66
LSM1-202ENST00000520286 NEURL1BA8MQ27 555 aa10.94□□□□□ -0.66
LSM1-202ENST00000520286 U2SURPO15042 1029 aaKnown RBP10.94□□□□□ -0.66
LSM1-202ENST00000520286 BPNT1O95861 308 aa10.94□□□□□ -0.66
LSM1-202ENST00000520286 EPHA1P21709 976 aa10.94□□□□□ -0.66
LSM1-202ENST00000520286 ZNF165P49910 485 aa10.94□□□□□ -0.66
LSM1-202ENST00000520286 RAB33AQ14088 237 aa10.94□□□□□ -0.66
LSM1-202ENST00000520286 SDE2Q6IQ49 451 aa10.94□□□□□ -0.66
LSM1-202ENST00000520286 FERD3LQ96RJ6 166 aa10.94□□□□□ -0.66
LSM1-202ENST00000520286 IRX2Q9BZI1 471 aaPredicted RBP10.94□□□□□ -0.66
LSM1-202ENST00000520286 ELOA3CA0A087WX78 387 aaPredicted RBP10.93□□□□□ -0.66
LSM1-202ENST00000520286 ELOA3DA6NLF2 546 aaPredicted RBP10.93□□□□□ -0.66
LSM1-202ENST00000520286 SOX1O00570 391 aaPredicted RBP10.93□□□□□ -0.66
LSM1-202ENST00000520286 MAP2K3P46734 347 aa10.93□□□□□ -0.66
LSM1-202ENST00000520286 EIF6P56537 245 aaKnown RBP10.93□□□□□ -0.66
LSM1-202ENST00000520286 ZNF252P-AS1Q0IIN9 211 aa10.93□□□□□ -0.66
LSM1-202ENST00000520286 ELOA3BQ3SY89 546 aa10.93□□□□□ -0.66
LSM1-202ENST00000520286 FBXW10Q5XX13 1052 aa10.93□□□□□ -0.66
LSM1-202ENST00000520286 REC114Q7Z4M0 266 aa10.93□□□□□ -0.66
LSM1-202ENST00000520286 CACTIN-AS1Q8N1I8 211 aa10.93□□□□□ -0.66
LSM1-202ENST00000520286 ELOA3Q8NG57 546 aa10.93□□□□□ -0.66
LSM1-202ENST00000520286 GAL3ST3Q96A11 431 aa10.93□□□□□ -0.66
LSM1-202ENST00000520286 BRMS1Q9HCU9 246 aa10.93□□□□□ -0.66
LSM1-202ENST00000520286 SMAD7O15105 426 aaKnown RBP10.92□□□□□ -0.66
LSM1-202ENST00000520286 RGS9O75916 674 aaPredicted RBP10.92□□□□□ -0.66
LSM1-202ENST00000520286 CRBNQ96SW2 442 aa10.92□□□□□ -0.66
LSM1-202ENST00000520286 MBIPQ9NS73 344 aa10.92□□□□□ -0.66
LSM1-202ENST00000520286 H3BRJ5 948 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 ALAS2P22557 587 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 AP3B2Q13367 1082 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 TNNI3KQ59H18 835 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 SCARA3Q6AZY7 606 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 GK5Q6ZS86 529 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 PDZD3Q86UT5 571 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 JAZF1Q86VZ6 243 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 REXO1Q8N1G1 1221 aaKnown RBP10.91□□□□□ -0.66
LSM1-202ENST00000520286 NUDT8Q8WV74 236 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 SRPK1Q96SB4 655 aaKnown RBP10.91□□□□□ -0.66
LSM1-202ENST00000520286 GGA1Q9UJY5 639 aa10.91□□□□□ -0.66
LSM1-202ENST00000520286 ANKRD62A6NC57 917 aa10.9□□□□□ -0.66
LSM1-202ENST00000520286 TRIM37O94972 964 aa10.9□□□□□ -0.66
LSM1-202ENST00000520286 NCLP19338 710 aaKnown RBP10.9□□□□□ -0.66
LSM1-202ENST00000520286 GIPRP48546 466 aa10.9□□□□□ -0.66
LSM1-202ENST00000520286 PTPN11Q06124 597 aaPredicted RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms