RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 INTS3Q68E01 1043 aaKnown RBP10.5□□□□□ -0.73
SMARCB1-207ENST00000491967 ZDHHC15Q96MV8 337 aa10.5□□□□□ -0.73
SMARCB1-207ENST00000491967 API5Q9BZZ5 524 aaKnown RBP10.5□□□□□ -0.73
SMARCB1-207ENST00000491967 TESPA1A2RU30 521 aaPredicted RBP10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 SREBF2Q12772 1141 aa10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 TNFAIP1Q13829 316 aa10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 TTLL12Q14166 644 aaPredicted RBP10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 APOBEC3HQ6NTF7 200 aaKnown RBP10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 HHIPL2Q6UWX4 724 aa10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 CTU1Q7Z7A3 348 aaKnown RBP10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 LPIN2Q92539 896 aa10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 SLC10A4Q96EP9 437 aa10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 TDRD3Q9H7E2 651 aaKnown RBP10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 COPRSQ9NQ92 184 aa10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 FZD1Q9UP38 647 aa10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 HDAC5Q9UQL6 1122 aa10.49□□□□□ -0.73
SMARCB1-207ENST00000491967 MYH13Q9UKX3 1938 aa10.48□□□□□ -0.73
SMARCB1-207ENST00000491967 OTOFQ9HC10 1997 aa10.48□□□□□ -0.73
SMARCB1-207ENST00000491967 IFIT1P09914 478 aaKnown RBP10.48□□□□□ -0.73
SMARCB1-207ENST00000491967 UBTFL1P0CB47 393 aaPredicted RBP10.48□□□□□ -0.73
SMARCB1-207ENST00000491967 MTX1Q13505 466 aa10.48□□□□□ -0.73
SMARCB1-207ENST00000491967 PKN2Q16513 984 aaKnown RBP10.48□□□□□ -0.73
SMARCB1-207ENST00000491967 VPS37DQ86XT2 251 aa10.48□□□□□ -0.73
SMARCB1-207ENST00000491967 WNK4Q96J92 1243 aa10.48□□□□□ -0.73
SMARCB1-207ENST00000491967 CLMNQ96JQ2 1002 aa10.48□□□□□ -0.73
SMARCB1-207ENST00000491967 MANSC4A6NHS7 340 aaPredicted RBP10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 CCDC85CA6NKD9 419 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 GPR25O00155 361 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 TBC1D8O95759 1140 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 ALDH1A1P00352 501 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 GJA5P36382 358 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 IREB2P48200 963 aaKnown RBP10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 RBM5P52756 815 aaKnown RBP eCLIP10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 PRKG1Q13976 671 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 FAM83AQ86UY5 434 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 IFNL1Q8IU54 200 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 CDAN1Q8IWY9 1227 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 ANKRD13AQ8IZ07 590 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 WDR66Q8TBY9 1149 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 ZNF296Q8WUU4 475 aaPredicted RBP10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 TEKT1Q969V4 418 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 R3HDMLQ9H3Y0 253 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 VEZTQ9HBM0 779 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 IQSEC3Q9UPP2 1182 aaPredicted RBP10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 LRRFIP2Q9Y608 721 aaKnown RBP10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 SALL1Q9NSC2 1324 aa10.47□□□□□ -0.73
SMARCB1-207ENST00000491967 PDE4DIPQ5VU43 2346 aa10.46□□□□□ -0.73
SMARCB1-207ENST00000491967 SEMA3EO15041 775 aa10.46□□□□□ -0.73
SMARCB1-207ENST00000491967 SLC5A1P13866 664 aa10.46□□□□□ -0.73
SMARCB1-207ENST00000491967 IL15P40933 162 aaPredicted RBP10.46□□□□□ -0.73
SMARCB1-207ENST00000491967 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.46□□□□□ -0.73
SMARCB1-207ENST00000491967 MS4A4AQ96JQ5 239 aa10.46□□□□□ -0.73
SMARCB1-207ENST00000491967 MEIS3Q99687 375 aa10.46□□□□□ -0.73
SMARCB1-207ENST00000491967 CEP126Q9P2H0 1117 aa10.46□□□□□ -0.73
SMARCB1-207ENST00000491967 MAST3O60307 1309 aa10.46□□□□□ -0.73
SMARCB1-207ENST00000491967 RPAP1Q9BWH6 1393 aaPredicted RBP10.45□□□□□ -0.74
SMARCB1-207ENST00000491967 PDS5AQ29RF7 1337 aaKnown RBP10.45□□□□□ -0.74
SMARCB1-207ENST00000491967 IGF2BP3O00425 579 aaKnown RBP eCLIP10.45□□□□□ -0.74
SMARCB1-207ENST00000491967 TRIM27P14373 513 aa10.45□□□□□ -0.74
SMARCB1-207ENST00000491967 TNNI2P48788 182 aa10.45□□□□□ -0.74
SMARCB1-207ENST00000491967 CHAF1AQ13111 956 aaPredicted RBP10.45□□□□□ -0.74
SMARCB1-207ENST00000491967 PTPN18Q99952 460 aa10.45□□□□□ -0.74
SMARCB1-207ENST00000491967 TMEM39BQ9GZU3 492 aa10.45□□□□□ -0.74
SMARCB1-207ENST00000491967 TCP10L2B9ZVM9 353 aa10.44□□□□□ -0.74
SMARCB1-207ENST00000491967 IPO8O15397 1037 aaKnown RBP10.44□□□□□ -0.74
SMARCB1-207ENST00000491967 FKTNO75072 461 aa10.44□□□□□ -0.74
SMARCB1-207ENST00000491967 FRAT2O75474 233 aaPredicted RBP10.44□□□□□ -0.74
SMARCB1-207ENST00000491967 GNAI3P08754 354 aa10.44□□□□□ -0.74
SMARCB1-207ENST00000491967 MAP3K9P80192 1104 aa10.44□□□□□ -0.74
SMARCB1-207ENST00000491967 MKRN3Q13064 507 aaKnown RBP10.44□□□□□ -0.74
SMARCB1-207ENST00000491967 ATP2B3Q16720 1220 aa10.44□□□□□ -0.74
SMARCB1-207ENST00000491967 ATF7IPQ6VMQ6 1270 aa10.44□□□□□ -0.74
SMARCB1-207ENST00000491967 MLLT1Q03111 559 aaPredicted RBP10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 VGLL4Q14135 290 aa10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 FAM163AQ96GL9 167 aaPredicted RBP10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 SIL1Q9H173 461 aa10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 GNL3LQ9NVN8 582 aaKnown RBP10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 ZNF112Q9UJU3 913 aa10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 HPS5Q9UPZ3 1129 aa10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 PA2G4Q9UQ80 394 aaKnown RBP10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 DAGLAQ9Y4D2 1042 aa10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 MYH2Q9UKX2 1941 aa10.43□□□□□ -0.74
SMARCB1-207ENST00000491967 SPDYE5A6NIY4 337 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 BCAR3O75815 825 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 PRDX5P30044 214 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 PHKA1P46020 1223 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 CACNB3P54284 484 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 CCDC102BQ68D86 513 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 CDC42EP5Q6NZY7 148 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 FBXO46Q6PJ61 603 aaPredicted RBP10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 FAM151AQ8WW52 585 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 OPTNQ96CV9 577 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 HOOK2Q96ED9 719 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 DENND2AQ9ULE3 1009 aa10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 TNRC18O15417 2968 aaPredicted RBP10.42□□□□□ -0.74
SMARCB1-207ENST00000491967 KIAA0100Q14667 2235 aaKnown RBP10.41□□□□□ -0.74
SMARCB1-207ENST00000491967 GAKO14976 1311 aa10.41□□□□□ -0.74
SMARCB1-207ENST00000491967 SRGAP3O43295 1099 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms