RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 NUP188Q5SRE5 1749 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 MINDY4BA8MYZ0 360 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 SMARCC2Q8TAQ2 1214 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 PHKBQ93100 1093 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 SPATA31A5Q5VU36 1347 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 SPATA31A7Q8IWB4 1347 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 TOM1O60784 492 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 GNL2Q13823 731 aaKnown RBP12.82□□□□□ -0.36
DDX56-203ENST00000421223 CYB5R4Q7L1T6 521 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 LUZP1Q86V48 1076 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 ZNF274Q96GC6 653 aaPredicted RBP12.82□□□□□ -0.36
DDX56-203ENST00000421223 LLPHQ9BRT6 129 aaKnown RBP12.82□□□□□ -0.36
DDX56-203ENST00000421223 ZSCAN16Q9H4T2 348 aaPredicted RBP12.82□□□□□ -0.36
DDX56-203ENST00000421223 ROBO1Q9Y6N7 1651 aa12.82□□□□□ -0.36
DDX56-203ENST00000421223 FDPSP14324 419 aaKnown RBP12.81□□□□□ -0.36
DDX56-203ENST00000421223 MB21D2Q8IYB1 491 aaPredicted RBP12.81□□□□□ -0.36
DDX56-203ENST00000421223 LINC00116Q8NCU8 138 aa12.81□□□□□ -0.36
DDX56-203ENST00000421223 PDLIM2Q96JY6 352 aa12.81□□□□□ -0.36
DDX56-203ENST00000421223 ZNF652Q9Y2D9 606 aa12.81□□□□□ -0.36
DDX56-203ENST00000421223 SLC4A4Q9Y6R1 1079 aa12.81□□□□□ -0.36
DDX56-203ENST00000421223 ITGB4P16144 1822 aa12.81□□□□□ -0.36
DDX56-203ENST00000421223 SLC4A8Q2Y0W8 1093 aa12.81□□□□□ -0.36
DDX56-203ENST00000421223 PARP10Q53GL7 1025 aa12.81□□□□□ -0.36
DDX56-203ENST00000421223 CCAR1Q8IX12 1150 aaKnown RBP12.81□□□□□ -0.36
DDX56-203ENST00000421223 NTSR2O95665 410 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 SASS6Q6UVJ0 657 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 ANKRD18AQ8IVF6 992 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 CHMP4CQ96CF2 233 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 STRBPQ96SI9 672 aaKnown RBP12.8□□□□□ -0.36
DDX56-203ENST00000421223 TTC12Q9H892 705 aaPredicted RBP12.8□□□□□ -0.36
DDX56-203ENST00000421223 CCDC39Q9UFE4 941 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 THRAP3Q9Y2W1 955 aaKnown RBP12.8□□□□□ -0.36
DDX56-203ENST00000421223 IFIT3O14879 490 aaKnown RBP12.8□□□□□ -0.36
DDX56-203ENST00000421223 DHX16O60231 1041 aaKnown RBP12.8□□□□□ -0.36
DDX56-203ENST00000421223 CYP7A1P22680 504 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 TYRO3Q06418 890 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 UBE3CQ15386 1083 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 ANO6Q4KMQ2 910 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 TMEM67Q5HYA8 995 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 IFNL3Q8IZI9 196 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 SDR42E1Q8WUS8 393 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 NBPF3Q9H094 633 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 NHSL1Q5SYE7 1610 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 GNPATO15228 680 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 METAP2P50579 478 aaKnown RBP eCLIP12.8□□□□□ -0.36
DDX56-203ENST00000421223 DRC7Q8IY82 874 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 CMTR1Q8N1G2 835 aaKnown RBP12.8□□□□□ -0.36
DDX56-203ENST00000421223 LCORLQ8N3X6 602 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 SMARCC1Q92922 1105 aaPredicted RBP12.8□□□□□ -0.36
DDX56-203ENST00000421223 CARMIL3Q8ND23 1372 aa12.8□□□□□ -0.36
DDX56-203ENST00000421223 FGFR2P21802 821 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 ARID4AP29374 1257 aaPredicted RBP12.79□□□□□ -0.36
DDX56-203ENST00000421223 CHAF1AQ13111 956 aaPredicted RBP12.79□□□□□ -0.36
DDX56-203ENST00000421223 STK38Q15208 465 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 DNTTIP2Q5QJE6 756 aaKnown RBP12.79□□□□□ -0.36
DDX56-203ENST00000421223 CCDC73Q6ZRK6 1079 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 CDC5LQ99459 802 aaKnown RBP12.79□□□□□ -0.36
DDX56-203ENST00000421223 NEDD4P46934 1319 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 UBE2Q2LH0YL09 131 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 TBC1D9BQ66K14 1250 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 NUP133Q8WUM0 1156 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 ZNF396Q96N95 335 aaPredicted RBP12.79□□□□□ -0.36
DDX56-203ENST00000421223 AGXT2Q9BYV1 514 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 DNAJC25Q9H1X3 360 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 TFCP2L1Q9NZI6 479 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 ANGEL1Q9UNK9 670 aaKnown RBP12.79□□□□□ -0.36
DDX56-203ENST00000421223 HPS5Q9UPZ3 1129 aa12.79□□□□□ -0.36
DDX56-203ENST00000421223 SMIM22K7EJ46 135 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 HS1BP3Q53T59 392 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 NAA16Q6N069 864 aaPredicted RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 SYNE3Q6ZMZ3 975 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 C17orf53Q8N3J3 647 aaPredicted RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 FSIP1Q8NA03 581 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 CELF1Q92879 486 aaKnown RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 ELP1O95163 1332 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 A0A1B0GVL5 298 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 NBPF5PQ86XG9 351 aaPredicted RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 EPB41L4AQ9HCS5 686 aaPredicted RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 ZSWIM5Q9P217 1185 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 NOL7Q9UMY1 257 aaKnown RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 PAPPAQ13219 1627 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 PATL2C9JE40 543 aaKnown RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 ZPR1O75312 459 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 ATP2B1P20020 1258 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 MARCKSP29966 332 aaPredicted RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 MFSD6Q6ZSS7 791 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 SDF4Q9BRK5 362 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 DDX19AQ9NUU7 478 aaKnown RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 ZKSCAN5Q9Y2L8 839 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 R3HCC1Q9Y3T6 440 aaKnown RBP12.78□□□□□ -0.36
DDX56-203ENST00000421223 CLIC4Q9Y696 253 aa12.78□□□□□ -0.36
DDX56-203ENST00000421223 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.78□□□□□ -0.36
DDX56-203ENST00000421223 CCDC69A6NI79 296 aa12.77□□□□□ -0.36
DDX56-203ENST00000421223 GOLGA8AA7E2F4 631 aa12.77□□□□□ -0.36
DDX56-203ENST00000421223 KINO60870 393 aaKnown RBP12.77□□□□□ -0.36
DDX56-203ENST00000421223 ALG1Q9BT22 464 aa12.77□□□□□ -0.36
DDX56-203ENST00000421223 MRVI1Q9Y6F6 885 aa12.77□□□□□ -0.36
DDX56-203ENST00000421223 COL14A1Q05707 1796 aaKnown RBP12.77□□□□□ -0.37
DDX56-203ENST00000421223 TCRBV5S4A2TA0A5A2 114 aa12.77□□□□□ -0.37
DDX56-203ENST00000421223 ZBTB43O43298 467 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms