RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 OSBP2Q969R2 916 aa17.17■□□□□ 0.34
SF3B1-204ENST00000414963 FAM163AQ96GL9 167 aaPredicted RBP17.17■□□□□ 0.34
SF3B1-204ENST00000414963 MRIQ9BWK5 157 aa17.17■□□□□ 0.34
SF3B1-204ENST00000414963 MYH13Q9UKX3 1938 aa17.16■□□□□ 0.34
SF3B1-204ENST00000414963 FZD9O00144 591 aa17.16■□□□□ 0.34
SF3B1-204ENST00000414963 GRIN3BO60391 1043 aa17.16■□□□□ 0.34
SF3B1-204ENST00000414963 REC8O95072 547 aa17.16■□□□□ 0.34
SF3B1-204ENST00000414963 GSTO1P78417 241 aa17.16■□□□□ 0.34
SF3B1-204ENST00000414963 SLFNL1Q499Z3 407 aa17.16■□□□□ 0.34
SF3B1-204ENST00000414963 NAA16Q6N069 864 aaPredicted RBP17.16■□□□□ 0.34
SF3B1-204ENST00000414963 IL25Q9H293 177 aa17.16■□□□□ 0.34
SF3B1-204ENST00000414963 CYP7A1P22680 504 aa17.15■□□□□ 0.34
SF3B1-204ENST00000414963 MFAP1P55081 439 aaKnown RBP17.15■□□□□ 0.34
SF3B1-204ENST00000414963 CXCL9Q07325 125 aa17.15■□□□□ 0.34
SF3B1-204ENST00000414963 DZIP1Q86YF9 867 aaKnown RBP17.15■□□□□ 0.34
SF3B1-204ENST00000414963 SLF2Q8IX21 1173 aa17.15■□□□□ 0.34
SF3B1-204ENST00000414963 PUS7LQ9H0K6 701 aaKnown RBP17.15■□□□□ 0.34
SF3B1-204ENST00000414963 MAST3O60307 1309 aa17.15■□□□□ 0.34
SF3B1-204ENST00000414963 MYO3BQ8WXR4 1341 aa17.15■□□□□ 0.34
SF3B1-204ENST00000414963 LDHCP07864 332 aa17.14■□□□□ 0.33
SF3B1-204ENST00000414963 HDLBPQ00341 1268 aaKnown RBP17.14■□□□□ 0.33
SF3B1-204ENST00000414963 TNIP1Q15025 636 aa17.14■□□□□ 0.33
SF3B1-204ENST00000414963 RSBN1LQ6PCB5 846 aaPredicted RBP17.14■□□□□ 0.33
SF3B1-204ENST00000414963 FBXW7Q969H0 707 aa17.14■□□□□ 0.33
SF3B1-204ENST00000414963 SEC62Q99442 399 aaKnown RBP17.14■□□□□ 0.33
SF3B1-204ENST00000414963 GMLQ99445 158 aa17.14■□□□□ 0.33
SF3B1-204ENST00000414963 SCN9AQ15858 1988 aa17.14■□□□□ 0.33
SF3B1-204ENST00000414963 M0R2C6 588 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 PSMD14O00487 310 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 RAD17O75943 681 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 MMP14P50281 582 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 GPR162Q16538 588 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 CIAPIN1Q6FI81 312 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 ADGRA1Q86SQ6 560 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 ZNF589Q86UQ0 364 aaPredicted RBP17.13■□□□□ 0.33
SF3B1-204ENST00000414963 MXD3Q9BW11 206 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 LSG1Q9H089 658 aaKnown RBP17.13■□□□□ 0.33
SF3B1-204ENST00000414963 CCDC171Q6TFL3 1326 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 SRCAPQ6ZRS2 3230 aa17.13■□□□□ 0.33
SF3B1-204ENST00000414963 ZNF646O15015 1829 aaPredicted RBP17.12■□□□□ 0.33
SF3B1-204ENST00000414963 MYO5AQ9Y4I1 1855 aaKnown RBP17.12■□□□□ 0.33
SF3B1-204ENST00000414963 PPP4CP60510 307 aa17.12■□□□□ 0.33
SF3B1-204ENST00000414963 KIAA1211Q6ZU35 1233 aa17.12■□□□□ 0.33
SF3B1-204ENST00000414963 CERS3Q8IU89 383 aa17.12■□□□□ 0.33
SF3B1-204ENST00000414963 AGBL3Q8NEM8 1001 aa17.12■□□□□ 0.33
SF3B1-204ENST00000414963 STRBPQ96SI9 672 aaKnown RBP17.12■□□□□ 0.33
SF3B1-204ENST00000414963 USP26Q9BXU7 913 aa17.12■□□□□ 0.33
SF3B1-204ENST00000414963 TTF2Q9UNY4 1162 aaKnown RBP17.12■□□□□ 0.33
SF3B1-204ENST00000414963 GAKO14976 1311 aa17.12■□□□□ 0.33
SF3B1-204ENST00000414963 PSME4Q14997 1843 aa17.12■□□□□ 0.33
SF3B1-204ENST00000414963 MYH7P12883 1935 aa17.11■□□□□ 0.33
SF3B1-204ENST00000414963 GOLGB1Q14789 3259 aaKnown RBP17.11■□□□□ 0.33
SF3B1-204ENST00000414963 GPR75-ASB3A0A0A6YYF3 556 aa17.11■□□□□ 0.33
SF3B1-204ENST00000414963 GPAA1O43292 621 aa17.11■□□□□ 0.33
SF3B1-204ENST00000414963 EIF6P56537 245 aaKnown RBP17.11■□□□□ 0.33
SF3B1-204ENST00000414963 HHIPL2Q6UWX4 724 aa17.11■□□□□ 0.33
SF3B1-204ENST00000414963 RIOK1Q9BRS2 568 aaKnown RBP17.11■□□□□ 0.33
SF3B1-204ENST00000414963 UPF2Q9HAU5 1272 aaKnown RBP17.11■□□□□ 0.33
SF3B1-204ENST00000414963 MROH7-TTC4A0A0A0MT08 1334 aa17.11■□□□□ 0.33
SF3B1-204ENST00000414963 MAST2Q6P0Q8 1798 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 MAGEB6P1A0A0J9YX57 407 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 GNAT2P19087 354 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 RPS12P25398 132 aaKnown RBP17.1■□□□□ 0.33
SF3B1-204ENST00000414963 DIXDC1Q155Q3 683 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 CCDC129Q6ZRS4 1044 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 MAP4K1Q92918 833 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 AIDAQ96BJ3 306 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 DSCC1Q9BVC3 393 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 ANO2Q9NQ90 1003 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 SERPINA10Q9UK55 444 aa17.1■□□□□ 0.33
SF3B1-204ENST00000414963 MBD4O95243 580 aa17.09■□□□□ 0.33
SF3B1-204ENST00000414963 BAG3O95817 575 aa17.09■□□□□ 0.33
SF3B1-204ENST00000414963 PTH1RQ03431 593 aa17.09■□□□□ 0.33
SF3B1-204ENST00000414963 KIAA0825Q8IV33 1275 aa17.09■□□□□ 0.33
SF3B1-204ENST00000414963 DPF2Q92785 391 aa17.09■□□□□ 0.33
SF3B1-204ENST00000414963 ZDHHC15Q96MV8 337 aa17.09■□□□□ 0.33
SF3B1-204ENST00000414963 RPAP1Q9BWH6 1393 aaPredicted RBP17.09■□□□□ 0.33
SF3B1-204ENST00000414963 FOXP2O15409 715 aa17.08■□□□□ 0.32
SF3B1-204ENST00000414963 HSPD1P10809 573 aaKnown RBP17.08■□□□□ 0.32
SF3B1-204ENST00000414963 C9orf131Q5VYM1 1079 aa17.08■□□□□ 0.32
SF3B1-204ENST00000414963 MIGA1Q8NAN2 632 aa17.08■□□□□ 0.32
SF3B1-204ENST00000414963 TEKT1Q969V4 418 aa17.08■□□□□ 0.32
SF3B1-204ENST00000414963 ARMT1Q9H993 441 aa17.08■□□□□ 0.32
SF3B1-204ENST00000414963 RNF181Q9P0P0 153 aa17.08■□□□□ 0.32
SF3B1-204ENST00000414963 DAGLAQ9Y4D2 1042 aa17.08■□□□□ 0.32
SF3B1-204ENST00000414963 SBF1O95248 1867 aa17.07■□□□□ 0.32
SF3B1-204ENST00000414963 CCDC88AQ3V6T2 1871 aa17.07■□□□□ 0.32
SF3B1-204ENST00000414963 ZC3H4Q9UPT8 1303 aaKnown RBP17.07■□□□□ 0.32
SF3B1-204ENST00000414963 PATL2C9JE40 543 aaKnown RBP17.07■□□□□ 0.32
SF3B1-204ENST00000414963 F8W031 263 aaPredicted RBP17.07■□□□□ 0.32
SF3B1-204ENST00000414963 USP17L8P0C7I0 530 aa17.07■□□□□ 0.32
SF3B1-204ENST00000414963 PLCG2P16885 1265 aa17.07■□□□□ 0.32
SF3B1-204ENST00000414963 CRKP46108 304 aa17.07■□□□□ 0.32
SF3B1-204ENST00000414963 RBM25P49756 843 aaKnown RBP17.07■□□□□ 0.32
SF3B1-204ENST00000414963 DYNLL1P63167 89 aaKnown RBP17.07■□□□□ 0.32
SF3B1-204ENST00000414963 ALX1Q15699 326 aa17.07■□□□□ 0.32
SF3B1-204ENST00000414963 LCORLQ8N3X6 602 aa17.07■□□□□ 0.32
SF3B1-204ENST00000414963 TBC1D32Q96NH3 1257 aa17.07■□□□□ 0.32
SF3B1-204ENST00000414963 NOL10Q9BSC4 688 aaKnown RBP17.07■□□□□ 0.32
SF3B1-204ENST00000414963 U3KPZ7 1027 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms