RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 C20orf196Q8IYI0 205 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SMPXQ9UHP9 88 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 HMGXB3Q12766 1538 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 TRAV27A0A087WT01 109 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 COL9A3Q14050 684 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SCARF1Q14162 830 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 FKBP1CQ5VVH2 108 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 CHCHD5Q9BSY4 110 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 NRN1Q9NPD7 142 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 NHP2Q9NX24 153 aaKnown RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 OCIAD1Q9NX40 245 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF236Q9UL36 1845 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 CDC42EP2O14613 210 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 STC1P52823 247 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 PSG5Q15238 335 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 MS4A18Q3C1V0 323 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 TECRLQ5HYJ1 363 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 CEACAM19Q7Z692 300 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 TPRX1Q8N7U7 411 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 GPR35Q9HC97 309 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 PLA2G2EQ9NZK7 142 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 ADAMTS12P58397 1594 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 C10orf105Q8TEF2 133 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SCARF2Q96GP6 870 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 C2orf50Q96LR7 162 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SLC25A22Q9H936 323 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 Q9N2J8 555 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 CES1P1Q9UKY3 287 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 CUL7Q14999 1698 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 HMSDA8MTL9 139 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 GCM2O75603 506 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SLC25A14O95258 325 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 HLA-DOBP13765 273 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 OPRM1P35372 400 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 LPAR6P43657 344 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 FMODQ06828 376 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 FAM27E3Q08E93 113 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 ELOCQ15369 112 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SLC22A24Q8N4F4 322 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 KIR3DL3Q8N743 410 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 OR52P1PQ8NH57 321 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 RTP4Q96DX8 246 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 V9GY05 133 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 PATJQ8NI35 1801 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 A0A087WWL8 130 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 IGHV5-51A0A0C4DH38 117 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 BTNL10A8MVZ5 291 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 A8MZ25 164 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SNURFLB1AK76 121 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 EEDO75530 441 aaKnown RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 AQP1P29972 269 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 OPRK1P41145 380 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 UBE2E1P51965 193 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 APOC4P55056 127 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 MTPNP58546 118 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 C2orf68Q2NKX9 166 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 SYPL2Q5VXT5 272 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 Q6ZUT4 128 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 EXOC3-AS1Q8N2X6 119 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 PPDPFLQ8WWR9 84 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF587Q96SQ5 575 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-221ENST00000641996 MDFIQ99750 246 aa3.05□□□□□ -1.92
SCN1A-221ENST00000641996 CRISP2P16562 243 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF708P17019 499 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 MPV17L2Q567V2 206 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 APOBEC3GQ9HC16 384 aaKnown RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 ATRNO75882 1429 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 H3BSH0 61 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 CYB561D1Q8N8Q1 229 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 CLDN23Q96B33 292 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 SSBP3Q9BWW4 388 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 VN1R3Q9BXE9 311 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 PILRAQ9UKJ1 303 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 IQGAP2Q13576 1575 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 SPINK4O60575 86 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 HSPB1P04792 205 aaKnown RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 LEPP41159 167 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 ARFRP1Q13795 201 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 ETDBQ3ZM63 59 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM42Q69YG0 159 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 C10orf111Q8N326 155 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 LIME1Q9H400 295 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 PRORYQ9H606 182 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 PNRC2Q9NPJ4 139 aaKnown RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 PRTFDC1Q9NRG1 225 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 SPANXB1Q9NS25 103 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 A1L4Q6 167 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 C9orf118A6NHY6 69 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 OCC1Q8TAD7 63 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 KIR2DL4Q99706 377 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 SH3BGRL3Q9H299 93 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 STARD5Q9NSY2 213 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-221ENST00000641996 TCRBV5S4A2TA0A5A2 114 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 TCP10L2B9ZVM9 353 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 TCRAP04437 139 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 AMY1AP04745 511 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 CXCL1P09341 107 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 RTL8BQ17RB0 113 aa3.04□□□□□ -1.92
SCN1A-221ENST00000641996 GPR146Q96CH1 333 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 283.1 ms