RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 VN1R4Q7Z5H5 301 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 LILRA3Q8N6C8 439 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 OR52M1Q8NGK5 317 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 LOXL4Q96JB6 756 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 RPP21Q9H633 154 aaKnown RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 RNF115Q9Y4L5 304 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 C5orf49A4QMS7 147 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 HSPB6O14558 160 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 SCRG1O75711 98 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 GPX1P07203 203 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 CSN3P07498 182 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 IL6RP08887 468 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF77Q15935 545 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 ASCL5Q7RTU5 278 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 FER1L6-AS1Q8NA97 138 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 DNASE2BQ8WZ79 361 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 ADIPOQQ15848 244 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF502Q8TBZ5 544 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 RTBDNQ9BSG5 229 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 ARL14EPLP0DKL9 152 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 PTGER1P34995 402 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 CYB561P49447 251 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 EIF4EBP2Q13542 120 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 IZUMO4Q1ZYL8 232 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 C10orf128Q5T292 105 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 LDLRAD1Q5T700 205 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 ORMDL3Q8N138 153 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 EAF1Q96JC9 268 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 GEMIN7Q9H840 131 aaKnown RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 FGF21Q9NSA1 209 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 RALGAPA1Q6GYQ0 2036 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 PHIPQ8WWQ0 1821 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 MS4A18H0YCH9 400 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF735P0CB33 412 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 MS4A18Q3C1V0 323 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 DRAM1Q8N682 238 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 POLR3KQ9Y2Y1 108 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 KLF13Q9Y2Y9 288 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SHISA3A0PJX4 238 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 DPM2O94777 84 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 IL11P20809 199 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 P2RY6Q15077 328 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 TMEM230Q96A57 120 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SPXQ9BT56 116 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 KLF12Q9Y4X4 402 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 PGLYRP1O75594 196 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 CEACAM21Q3KPI0 293 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 ORMDL2Q53FV1 153 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SLC35E4Q6ICL7 350 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 BHLHA15Q7RTS1 189 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 EMC6Q9BV81 110 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 GRIFINA4D1Z8 144 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 C9orf118A6NHY6 69 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 DLL1O00548 723 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 LHFPL4Q7Z7J7 247 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 TSKUQ8WUA8 353 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 MS4A5Q9H3V2 200 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SAA2-SAA4A0A096LPE2 208 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 MST1P26927 711 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SRD5A2P31213 254 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 HSPE1P61604 102 aaKnown RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 RSPO3Q9BXY4 272 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SPINK8P0C7L1 97 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 CCL1P22362 96 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 PLNP26678 52 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 CX3CL1P78423 397 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 GGTLC1Q9BX51 225 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 ACYP1P07311 99 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 CXCL1P09341 107 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SP9P0CG40 484 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SELLP14151 372 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 VN1R2Q8NFZ6 395 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SGK494Q96LW2 274 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 R3HDMLQ9H3Y0 253 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 FGF22Q9HCT0 170 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF716A6NP11 495 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 SPINK4O60575 86 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 PDLIM4P50479 330 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 KLF17Q5JT82 389 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-220ENST00000641603 OR4C3Q8NH37 302 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 C8orf44Q96CB5 159 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 CTHRC1Q96CG8 243 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 GNRHR2Q96P88 292 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 RTN4RQ9BZR6 473 aa4.01□□□□□ -1.77
SCN1A-220ENST00000641603 HOXA3O43365 443 aaPredicted RBP4□□□□□ -1.77
SCN1A-220ENST00000641603 ADCYAP1P18509 176 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 ARG2P78540 354 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 PSG6Q00889 435 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 CLEC2AQ6UVW9 174 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 ATOH7Q8N100 152 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 OR9G1Q8NH87 305 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 FCGR3BO75015 233 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 INAFM2P0DMQ5 153 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 ADMP35318 185 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 IGFLR1Q9H665 355 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 SHISA9B4DS77 424 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 H0YIZ8 118 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 CRYAAP02489 173 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 OR5AN1Q8NGI8 311 aa4□□□□□ -1.77
SCN1A-220ENST00000641603 ATP6V0E2Q8NHE4 81 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 254.2 ms