RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DLEU1O43261 78 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 GNG3P63215 75 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 Q6ZN92 141 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 ABHD12Q8N2K0 398 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 SMRP1Q8NCR6 262 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 PSMG3Q9BT73 122 aaPredicted RBP9.55□□□□□ -0.88
LDLR-208ENST00000558518 IGHV1-45A0A0A0MS14 117 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 UMODP07911 640 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 SSTR5P35346 364 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 HLA-DRB5Q30154 266 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 PRAMEF5Q5TYX0 476 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 PRAMEF6Q5VXH4 476 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 Q6ZWC4 215 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 KMT5CQ86Y97 462 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 ZNF573Q86YE8 665 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 DOLPP1Q86YN1 238 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 APOBEC3DQ96AK3 386 aaPredicted RBP9.55□□□□□ -0.88
LDLR-208ENST00000558518 FAM122AQ96E09 287 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 SFRP2Q96HF1 295 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 DNAJC4Q9NNZ3 241 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.55□□□□□ -0.88
LDLR-208ENST00000558518 IGLV3-12A0A075B6K2 115 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 PATE3B3GLJ2 98 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 SH2D1BO14796 132 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 GNG10P50151 68 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 C1orf194Q5T5A4 169 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 ASCL4Q6XD76 172 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 BEND2Q8NDZ0 799 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 OCC1Q8TAD7 63 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 WDYHV1Q96HA8 205 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 OR2J1Q9GZK6 312 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 NBASA2RRP1 2371 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 C17orf112F2Z3M2 114 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 MT-CO3P00414 261 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 COX6A1P12074 109 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 FKBP2P26885 142 aaKnown RBP9.54□□□□□ -0.88
LDLR-208ENST00000558518 S100A7P31151 101 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 TMEM183BQ1AE95 376 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 GCNT2Q8N0V5 402 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 RNASEH2CQ8TDP1 164 aaKnown RBP9.54□□□□□ -0.88
LDLR-208ENST00000558518 LEAP2Q969E1 77 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 REPIN1Q9BWE0 567 aaKnown RBP9.54□□□□□ -0.88
LDLR-208ENST00000558518 PLCE1Q9P212 2302 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 PLXNB1O43157 2135 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 DIRC3C9JPN6 131 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 TMEM250H0YL14 139 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 APH1AQ96BI3 265 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 UHRF2Q96PU4 802 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 TMEM106BQ9NUM4 274 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 IL36GQ9NZH8 169 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 GNG12Q9UBI6 72 aa9.54□□□□□ -0.88
LDLR-208ENST00000558518 IGLV3-32A0A0A0MS00 114 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 MARCH11A6NNE9 402 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 CA1P00915 261 aaPredicted RBP9.53□□□□□ -0.88
LDLR-208ENST00000558518 CD82P27701 267 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 CYB561P49447 251 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 PTTG1IPP53801 180 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 SUMO1P63165 101 aaKnown RBP9.53□□□□□ -0.88
LDLR-208ENST00000558518 PRR27Q6MZM9 219 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 GGNQ86UU5 652 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 TGIF2LYQ8IUE0 185 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 ST6GALNAC6Q969X2 333 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 GALMQ96C23 342 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 SGK494Q96LW2 274 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 QTRT1Q9BXR0 403 aaKnown RBP9.53□□□□□ -0.88
LDLR-208ENST00000558518 CHRNA10Q9GZZ6 450 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 LPAR2Q9HBW0 351 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 RPH3ALQ9UNE2 315 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 CBY1Q9Y3M2 126 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 KIAA1549Q9HCM3 1950 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 ETV2O00321 342 aaPredicted RBP9.53□□□□□ -0.88
LDLR-208ENST00000558518 CLDN14O95500 239 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 CELA3BP08861 270 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 OR10J4P0C629 311 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 RAB7AP51149 207 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 SPATA31B1PQ5VZV4 182 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 OR4P4Q8NGL7 312 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 DCAF16Q9NXF7 216 aa9.53□□□□□ -0.88
LDLR-208ENST00000558518 INTS1Q8N201 2190 aaKnown RBP9.53□□□□□ -0.88
LDLR-208ENST00000558518 YLPM1P49750 1951 aaKnown RBP9.53□□□□□ -0.88
LDLR-208ENST00000558518 ZNF253O75346 499 aa9.52□□□□□ -0.88
LDLR-208ENST00000558518 CHRNB4P30926 498 aa9.52□□□□□ -0.88
LDLR-208ENST00000558518 MAGEA5P43359 124 aa9.52□□□□□ -0.88
LDLR-208ENST00000558518 STARD4Q96DR4 205 aa9.52□□□□□ -0.88
LDLR-208ENST00000558518 C1QTNF5Q9BXJ0 243 aa9.52□□□□□ -0.88
LDLR-208ENST00000558518 DEFB127Q9H1M4 99 aa9.52□□□□□ -0.88
LDLR-208ENST00000558518 CLCF1Q9UBD9 225 aa9.52□□□□□ -0.88
LDLR-208ENST00000558518 GATA2P23769 480 aaPredicted RBP9.52□□□□□ -0.89
LDLR-208ENST00000558518 CD1BP29016 333 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 SRD5A2P31213 254 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 SRP14P37108 136 aaKnown RBP9.52□□□□□ -0.89
LDLR-208ENST00000558518 FABP6P51161 128 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 RPL31P62899 125 aaKnown RBP9.52□□□□□ -0.89
LDLR-208ENST00000558518 ARG2P78540 354 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 CATR1Q13166 79 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 SPATA45Q537H7 98 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 KRTCAP3Q53RY4 240 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 LCN12Q6JVE5 192 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 OR4A16Q8NH70 328 aa9.52□□□□□ -0.89
LDLR-208ENST00000558518 SSBP3Q9BWW4 388 aaPredicted RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms