RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 FGFRL1Q8N441 504 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 FAM24BQ8N5W8 94 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 C11orf44Q8N8P7 122 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 FBXL15Q9H469 300 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 PARD6AQ9NPB6 346 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 NUP214P35658 2090 aaPredicted RBP7□□□□□ -1.29
SYNE2-220ENST00000555612 SCN10AQ9Y5Y9 1956 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 MARCH11A6NNE9 402 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 EFEMP2O95967 443 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 HTN3P15516 51 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 HSPE1P61604 102 aaKnown RBP7□□□□□ -1.29
SYNE2-220ENST00000555612 RUNX1Q01196 453 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 VAMP3Q15836 100 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 G6PC2Q9NQR9 355 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 C17orf100A8MU93 164 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 PDE6DO43924 150 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 HNRNPA3P51991 378 aaKnown RBP7□□□□□ -1.29
SYNE2-220ENST00000555612 CD300CQ08708 224 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 CD200R1LQ6Q8B3 271 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 ACP7Q6ZNF0 438 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 TMEM222Q9H0R3 208 aa7□□□□□ -1.29
SYNE2-220ENST00000555612 DOCK3Q8IZD9 2030 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 ZNF253O75346 499 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 CLDN18P56856 261 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 HIST1H1AQ02539 215 aaPredicted RBP6.99□□□□□ -1.29
SYNE2-220ENST00000555612 ZNF79Q15937 498 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 ZCCHC24Q8N2G6 241 aaKnown RBP6.99□□□□□ -1.29
SYNE2-220ENST00000555612 H0YL77 283 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 PHOX2AO14813 284 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 IGHV3-11P01762 117 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 IGHMP01871 453 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 ATP6V0CP27449 155 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 MIC13Q5XKP0 118 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 HSD17B13Q7Z5P4 300 aaPredicted RBP6.99□□□□□ -1.29
SYNE2-220ENST00000555612 AQP3Q92482 292 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 HSPB7Q9UBY9 170 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 A0A0B4J293 547 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 LOC389332A0A1B0GUA5 103 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 PGPA6NDG6 321 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 THBDP07204 575 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 TSPOP30536 169 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 DLX1P56177 255 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 DEPPQ9NTK1 212 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 CACNA1EQ15878 2313 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 NPIPB6E9PJ23 425 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 PLA2G10O15496 165 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 KBTBD11O94819 623 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 ZP3P21754 424 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 TCTEX1D1Q8N7M0 179 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 MRPL30Q8TCC3 161 aaKnown RBP6.99□□□□□ -1.29
SYNE2-220ENST00000555612 PSMB2P49721 201 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 CD81P60033 236 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 ZNF880Q6PDB4 577 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 PPP1R3EQ9H7J1 279 aa6.99□□□□□ -1.29
SYNE2-220ENST00000555612 HMSDA8MTL9 139 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 CCKARP32238 428 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 VDAC2P45880 294 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-220ENST00000555612 LHX2P50458 406 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 NSUN5P1Q3KNT7 163 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 TMEM30BQ3MIR4 351 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 FAM74A4Q5TZK3 123 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 FAM53AQ6NSI3 398 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-220ENST00000555612 MYOZ3Q8TDC0 251 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 GPR146Q96CH1 333 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 NPFFR1Q9GZQ6 430 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 ARFGEF1Q9Y6D6 1849 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 TRAV34A0A0B4J273 112 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 NTN3O00634 580 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-220ENST00000555612 PITX3O75364 302 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 EMP1P54849 157 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 COLCA1Q6ZS62 124 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 SLC16A13Q7RTY0 426 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 PPP1R27Q86WC6 154 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 WDFY1Q8IWB7 410 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 OR8A1Q8NGG7 326 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 PHYHIPLQ96FC7 376 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 PHLDA3Q9Y5J5 127 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 PARP14Q460N5 1801 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 LOC102724200A0A096LPH7 203 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-220ENST00000555612 MOSP00540 346 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 IL4P05112 153 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 CXCL3P19876 107 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 NUTF2P61970 127 aaKnown RBP6.98□□□□□ -1.29
SYNE2-220ENST00000555612 CX3CL1P78423 397 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 PSG7Q13046 419 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 VAX1Q5SQQ9 334 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 Q96M66 194 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 MIEN1Q9BRT3 115 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 SPRR3Q9UBC9 169 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 IER3P46695 156 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 SLC25A33Q9BSK2 321 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 RSG1Q9BU20 258 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 EP300Q09472 2414 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-220ENST00000555612 FAM186AA6NE01 2351 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 PINLYPA6NC86 204 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 TMEM262E9PQX1 116 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 COMPP49747 757 aaPredicted RBP6.98□□□□□ -1.29
SYNE2-220ENST00000555612 PSG9Q00887 426 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 HLA-DRB5Q30154 266 aa6.98□□□□□ -1.29
SYNE2-220ENST00000555612 ANAPC16Q96DE5 110 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms